Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0152 |
Symbol | |
ID | 4257068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 175350 |
End bp | 176915 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638120748 |
Product | type II secretion system protein E (GspE) |
Protein accession | YP_736215 |
Protein GI | 114045665 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAA TACAAGTAAC CCAAGTCGAG GATTTAAGCC TAGTTTCTAA CGAACTAGGG CTTGAAGCCG AAGGTGATGA GGTATTTCGC TCCAGCAGCA AAGAGCGTTT ACCCTTTGCC TTTGCCCACC GCCATGAGGT GATTTTAGCC TTTGGCGAGG ATGGCGCCTT GAGCCTGTTT TATACCGCCA AAACTCCGTT AGCGGCCATG CTCGAAGCGC GCCGTTACTC GGGTGTGGAT TTGCCGCTGG TATTGCTCGA ACCGGGCAAG TTTGAGGCGA AATTAACTCA GGCCTATCAA GCCAACTCAT CCGAAGCGCA GCAGCTGATG GAAGATATTG GCAACGAGAT GGATTTATTC ACCCTCGCCG AAGAGCTGCC GCAAACCGAA GATCTGCTCG AAGGCGATGA TGATGCGCCT ATTATCAAGC TGATTAACGC CTTGTTATCT GAAGCGATTA AAGAAGAAGC CTCGGATATC CATATCGAAA CCTACGAGAA GCAATTAGTC GTGCGTTTCC GTATCGACGG TGTGCTGAAG GAAGTGCTTA AACCGAATCG TAAGCTGTCA TCCTTGTTGG TGTCGCGGAT TAAGGTGATG GCGCGTCTCG ATATCGCCGA GAAACGTGTG CCACAAGACG GCCGTATTTC GCTGCGGATT GCGGGTCGTG CGGTGGATGT GCGGGTATCG ACCATGCCAT CGAGCCATGG CGAGCGTGTG GTGCTGCGTC TGTTAGATAA AAACGCCGGT AATCTGGATT TAAAACAATT GGGTATGACC GACAGTATCC GTGCCAAGTT CGACGAGCTT ATTCGTCGTC CCCACGGCAT TATTCTGGTC ACAGGCCCTA CGGGTTCAGG TAAGAGTACT ACGCTGTACG CCGGGCTTAC CGAGATTAAC TCTAAAGATA CCAACATCTT AACCGTTGAA GATCCGATCG AATACGAGTT AGAAGGTATA GGTCAAACCC AAGTGAACAC TAAGGCTGAC ATGACCTTCG CCCGTGGTCT GCGTGCGATT CTGCGTCAGG ACCCGGATGT GGTGATGATC GGCGAAATCC GTGACCTTGA AACCGCCCAA ATTGCGGTGC AGGCATCCTT GACTGGTCAC TTAGTGATTT CAACCCTGCA TACCAACACG GCTTCTGGTG CAATTACCCG TTTGCAAGAC ATGGGCGTAG AGCCATTCCT AGTGTCATCG AGTTTGCTTG GGGTATTAGC ACAGCGTTTG ATACGTACCC TCTGTCCAAA ATGTAAGACA GAGCATGTGC CGGATGTCCG TGAGCGTGAG CTGCTGGGGA TTGCGGCGGA TGATCATCGC CATATTTATC GCGCCAATGG CTGTAAGGCC TGTGGTAACA GTGGTTACCG TGGTCGTACT GGCATCCATG AGTTATTGCT GGTCGATGAT AATGTGCGCG AGCTGATCCA CGGAGGTCGT GGTGAGCTGG CAATTGAGAA ATATATTCGC CAGTCGGTGC CGAGCATTCG CCATGATGGT ATGAGCAAGG TGCTCTCAGG TATCACTACT CTGGAAGAAG TCCTGAGGGT GACCCGCGAG GAGTAA
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Protein sequence | MSEIQVTQVE DLSLVSNELG LEAEGDEVFR SSSKERLPFA FAHRHEVILA FGEDGALSLF YTAKTPLAAM LEARRYSGVD LPLVLLEPGK FEAKLTQAYQ ANSSEAQQLM EDIGNEMDLF TLAEELPQTE DLLEGDDDAP IIKLINALLS EAIKEEASDI HIETYEKQLV VRFRIDGVLK EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI AGRAVDVRVS TMPSSHGERV VLRLLDKNAG NLDLKQLGMT DSIRAKFDEL IRRPHGIILV TGPTGSGKST TLYAGLTEIN SKDTNILTVE DPIEYELEGI GQTQVNTKAD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL IRTLCPKCKT EHVPDVRERE LLGIAADDHR HIYRANGCKA CGNSGYRGRT GIHELLLVDD NVRELIHGGR GELAIEKYIR QSVPSIRHDG MSKVLSGITT LEEVLRVTRE E
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