Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0151 |
Symbol | |
ID | 4257067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 173251 |
End bp | 175353 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638120747 |
Product | general secretion pathway protein D |
Protein accession | YP_736214 |
Protein GI | 114045664 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.124297 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCTGG CGCCACTATG CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAAGG CACTGATATC CAAGAGTTTA TCAACATCGT TGGTAAAAAC CTGAATAAAA CCATCATTGT CGACCCGACC ATTCGCGGCA AGATCAACGT GCGCAGTTAT GATCTGCTCA ACGATGAGCA GTATTACCAA TTCTTCCTCA ACGTGTTGCA AGTGTACGGT TATGCCATCG TCGAGATGGA AAACAACGTC ATCAAGGTCA TTAAAGACAA AGATGCGAAA ACCGCTGCGA TTCGTGTTGC TAACGACAAC GACCCAGGTT TAGGTGATGA AATGGTCACC CGCATCGTGG CGCTGTATAA CACCGAAGCC AAGCAGTTGG CGCCGTTGTT ACGTCAGTTA AATGATAACG CCGGTGGCGG TAACGTAGTG AACTACGACC CATCGAACGT ACTGATGCTG TCAGGCCGCG CCGCTGTAGT TAACAAGTTA GTTGAAATCG TTCGCCGTGT AGATAAGCAG GGCGATACCT CGGTACAAGT GGTGCCGCTC GAATACGCCT CAGCCGGTGA AATGGTGCGA ATTATCGATA CTCTTTACCG CGCGACAGCT AACCAAGCGC AGCTCCCGGG ACAAGCGCCC AAGGTCGTTG CCGACGAGCG CATTAACGCC GTAGTGGTCA GTGGTGACGA AAAGAGCCGC CAACGCGTGG TTGAGCTTAT CCATCGCCTC GATGCCGAGC AGGCCAGCAC GGGCAATACT AAGGTACGTT ATTTACGTTA TGCCAAGGCT GAAGATTTAG TCGAGGTGCT GACCGGATTT GCGCAAAAGC TTGAGGGTGA AAAAGATCCA AGTGCCCAGG CTGGCGGTAA ACGTCGTAAT GAAATCAATA TTATGGCCCA CACGGATACT AACGCCTTAG TGATCAGCGC CGAGCCAGAT CAAATGCGCA CTATCGAGAG TGTGATTAAC CAACTCGATA TTCGCCGCGC CCAAGTATTA GTCGAAGCCA TTATCGTGGA AGTCGCCGAA GGCGATAACG TCGGTTTTGG TGTGCAATGG GCCGCTAAAG CGGGCGGTGG TACTCAGTTC AATAACTTAG GCCCAACCAT TGGTGAAATT GGCGCCGGTA TTTGGCAGGC ACAGGGAGAA GATGGGACAA CTGTTTGTAC CGAGAATGGC ACTTGTACTG AAAACCCAGA TTCTAGAGGT GATGTGACTT TACTTGCCCA AGCCTTAGGT AAAGTGAATG GTATGGCTTG GGGCGTGGCC ATGGGCGACT TTGGCGCCTT AATACAAGCA GTATCGGCCG ATACCAACTC AAACGTACTG GCGACACCTT CGATTACAAC TCTAGATAAC CAAGAAGCCT CGTTTATCGT CGGTGACGAA GTGCCGATTC TGACCGGTTC TACCGCCAGC TCAAACAACA GTAACCCATT CCAAACCGTT GAACGTAAAG AGGTTGGGGT GAAGTTAAAA GTGGTGCCCC AGATCAACGA AGGCAACGCG GTTAAGCTCG CCATTGAGCA AGAAGTCTCG GGTGTAAACG GTAACACGGG TGTGGATATC TCCTTCGCGA CTCGCCGTTT AACCACCACT GTGATGGCCG ACTCAGGGCA AATCGTGGTG CTCGGTGGTT TGATTAACGA AGAAGTCCAA GAAAGCGTGC AGAAAGTACC ATTCCTCGGT GATATTCCGG TGCTCGGACA CTTATTCAAA TCTTCTTCCA GTAAGAAGAC CAAAAAGAAC CTGATGATCT TCATCAAGCC CACCATTATC CGTGATGGTG TGACTATGGA AGGTATCGCA GGCCGTAAAT ACAACTATTT CAGAGCATTG CAACTTGAGC AGCAAGAGCG CGGCGTGAAC CTGATGCCAA ATACTCAAGT GCCAATTCTG GAAGAATGGA ATCAATCTGA ATACCTGCCG CCCGAAGTGA ACGATATTTT AGATCGTTAC AAAGAAGGCA AAGGGTTAGA CACCCAGATG CGTGAAACGG ACTCGACCCT CAAGTCGCTG GATGAAAACA AGAACAAAGA TAAAACACAA TGA
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Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL VEIVRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQAQLPGQAP KVVADERINA VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP SAQAGGKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE GDNVGFGVQW AAKAGGGTQF NNLGPTIGEI GAGIWQAQGE DGTTVCTENG TCTENPDSRG DVTLLAQALG KVNGMAWGVA MGDFGALIQA VSADTNSNVL ATPSITTLDN QEASFIVGDE VPILTGSTAS SNNSNPFQTV ERKEVGVKLK VVPQINEGNA VKLAIEQEVS GVNGNTGVDI SFATRRLTTT VMADSGQIVV LGGLINEEVQ ESVQKVPFLG DIPVLGHLFK SSSSKKTKKN LMIFIKPTII RDGVTMEGIA GRKYNYFRAL QLEQQERGVN LMPNTQVPIL EEWNQSEYLP PEVNDILDRY KEGKGLDTQM RETDSTLKSL DENKNKDKTQ
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