| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0102 |
|---|
| Symbol | |
|---|
| ID | 4255564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 117412 |
|---|
| End bp | 119433 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638120697 |
|---|
| Product | selenocysteine-specific translation elongation factor SelB |
|---|
| Protein accession | YP_736165 |
|---|
| Protein GI | 114045615 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATGG TCACCGCGGG CCACGTCGAC CACGGCAAGA GCACGCTGAT CCGTGCCTTA
ACGGGGATGA ACACCGACAG GCTCCCCGAA GAAAAACGCC GTGGCATGAC CATCGATCTC
GGCTACGCCT TTATGCCACT GCAAGATGGT ACTCGCTTAG CCTTTATCGA TGTGCCCGGC
CATGAAAAAT TCATCAATAA CATGCTGGTG GGCGTGAGCC ATGTGCGCCA CGCGCTGCTG
GTGTTGGCCT GTGACGACGG CGTGATGCCG CAAACCCGCG AGCATCTGCA AATCCTTGCG
CTTTTACCGC TCAATAGTTT GACCTTAGTG CTGACCAAGC GGGATTTGGT CGATGACCAA
ACCGCCGCCA AGTTGACCCT AGAGGGGATG GCGCTGCTTG CCGAATACGG TATCGAGGCC
AGTGGCGTGT TTGAAGTCTG CGGGAATGAT GCAGGCGATG CGGGGGTAGA CACCCTTAAA
CAACATATTT TAGAGATCGC CGAGCAGCAA TCGACCCAAG CGGAAGATGC CAGCAGCTTT
AGGATGACGC TCGATCGCGC CTTTAGCGTT AAAGGCGCCG GCTGCGTGGT CACGGGCACT
GTGATTAGCG GCAGTGTGTG TGTCGGCGAT AGCCTCTACA GCTCTGGGCA AAAAGCAAAA
TTACGGGTGC GCGGCATTCA CTGCCAAGGG ATGGAAGTCC ATCGAGCACT CAGTGGCACT
CGTGTCGCGT TGAATCTTAC CGGTGTCGAT AACCACAGGG CGCCAGCCCG CGGTGACTGG
TTAAGCAGCC TGCCTCAGGC GGAGCTGTGC GCCAGACCCG TAGTGCAAAT TCGCAGTTTT
GAACCCTTAA CCCATTGGCA AAATGTGCAT TGTCACCACG GCGCCGACCA TACCCTTGGT
CGAGTGTCAC TACTCGATGA AGCCGATGAG CAGGGGCGTT ATCTGGCCGA AATTGTGCTC
GATAAGCCGC TGCTGCTGTG TCAGGACGAC CCGATAGTGC TCAGGCATGT TGGTGGCAAG
CAAACCCTGG GCGCTGGGCG GGTGCTGGCA TTAAAAGTCC CCAATCGTAA GAAGCGTACG
CCGGAGCGTG TCAGTAAGCT GCAACAGCTG GCCAAGCTCT CCAATCCGGT GAATGTGCTG
GCGCTACTCG GCCAGAGCGA AGCGCTCAGT ATTGATGAAA TCCGTTGGCG CTGGCAGCTA
ACCGATGAAG GGCTCGCAGC CATGCTGGCA CAGGCGGGGC TGACTCGCCT CGGTGCCTAT
GGGCTATCGA CCCAGCTACT CGAGCAAGAA AAACAGCAGT TTATCGAGCT GTTACGTGAG
TATCACCAAC AACATCCCGA CCAATTAGGG CTAGGGCGTA ATCGTCTGCA ACGCATGAGC
CACAACGTAT TGCCTAGCGA GCTTGCCAAT AAGGTGCTCG ATAGCCTCTG CCAAGACGGT
CAGATGGTGC TGCGCGGCGC TCTGCTGCAG TTGGCGGACC ACAGAATTGT CCTCGATAGC
GAGGCGCAGC AGTGCTGGCA ACGCTTGGCC CCTTGGTTGG CACTACAAAC CTCGCCCGTG
TGGGTGACTG AGATGGGGGA ATATCTCGAA CTCGAGCCCG CCAAACTCAG ATTGCTGTGT
TTTCAACTGG TGCAACAGGG CTTTATTACC GCTGTGGTGA AGGACAGATA TTTGCTGAGT
GAGCAGTTAT GCCATTACGC CAATCTGGTG CGTGAGCATG TGGAAACCCA CGGCAAGCTC
GAAACCGCAG AGTTTAAGGA TCTGATTGGC CTAGGCCGTA AGGTCAGTAT TCAGCTGTTG
GAGTTTTTTG ACCGCAGTGG TTTTACCCGT AGGAAATATC GCAGTAACAG TCGGGAGATC
CGGGATGGGG AACTGTTTTA TTCCCATGAG AATTGGCGGA AGAACATAGG AGTCGAACCT
ACCCAGGACT GCTGGCAGCC CTACCCGGAT TTGAAATCCG GACGCCTCAC CGGAGACGAC
GTTCTTCCAT TCGAAGACAG ACCGATAGTA GAAAATGCTT AA
|
|---|
| Protein sequence | MIMVTAGHVD HGKSTLIRAL TGMNTDRLPE EKRRGMTIDL GYAFMPLQDG TRLAFIDVPG
HEKFINNMLV GVSHVRHALL VLACDDGVMP QTREHLQILA LLPLNSLTLV LTKRDLVDDQ
TAAKLTLEGM ALLAEYGIEA SGVFEVCGND AGDAGVDTLK QHILEIAEQQ STQAEDASSF
RMTLDRAFSV KGAGCVVTGT VISGSVCVGD SLYSSGQKAK LRVRGIHCQG MEVHRALSGT
RVALNLTGVD NHRAPARGDW LSSLPQAELC ARPVVQIRSF EPLTHWQNVH CHHGADHTLG
RVSLLDEADE QGRYLAEIVL DKPLLLCQDD PIVLRHVGGK QTLGAGRVLA LKVPNRKKRT
PERVSKLQQL AKLSNPVNVL ALLGQSEALS IDEIRWRWQL TDEGLAAMLA QAGLTRLGAY
GLSTQLLEQE KQQFIELLRE YHQQHPDQLG LGRNRLQRMS HNVLPSELAN KVLDSLCQDG
QMVLRGALLQ LADHRIVLDS EAQQCWQRLA PWLALQTSPV WVTEMGEYLE LEPAKLRLLC
FQLVQQGFIT AVVKDRYLLS EQLCHYANLV REHVETHGKL ETAEFKDLIG LGRKVSIQLL
EFFDRSGFTR RKYRSNSREI RDGELFYSHE NWRKNIGVEP TQDCWQPYPD LKSGRLTGDD
VLPFEDRPIV ENA
|
|---|
| |