Gene Shewmr7_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0002 
Symbol 
ID4258035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1484 
End bp2584 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content46% 
IMG OID638120593 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_736065 
Protein GI114045515 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000472427 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00139326 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATTTT CAATTGATAG GGACGCCCTA TTAAAGCCGC TTCAATTGGT TTGTGGTGCG 
GTAGAAAGAC GCCATAACTT GCCTATTTTG GCAAATCTCC TTGTAGAAGT TAGTGGTCAC
TCACTCAAAA TGACAGGTAC CGACCTCGAA GTTGAGTTAG TGGGTCAGGC GGTTGTTCAT
GGTGATATCG AAGAGGGTCG CACAACAGTT CCTGCGAAGA AACTGTTAGA CATAGTTAAA
TCCTTACCCG AGCAAAGCGA GCTTAAGGTC GAGCAACAAG ATAACAAATG GTTGTTACGC
TCTGGCCGTA GCCGTTTCTC ACTGGCAACC CTGCCCGCAG AAGAATACCC CAATGTGGAA
GCCTTTCAGG CGGAAATCGA ATTTACCCTT AAGCAGGGCG TGCTGAAGTC GCTGATTGAT
GCGACTCAGT TTTCGATGGC GAACCAAGAC GTTCGTTACT ATCTGAATGG TTTATTGCTC
GAAACCGAAG GTAATGTGCT GCGTGCCATT GCCACCGACG GTCACCGCTT AGCCTTAAGC
CACAGAACCA TAGATGCGCA ATTACCTGAA AAACAAGTGA TCGTGCCCCG TAAAGGCGTG
ATGGAAATGG CGCGTTTGTT GGAAGCCGAT GATTTAGATA TCGCTATTGC CATTGGTGAT
AATGCGATTC GTGCGACCAC CAGCACCACA GTCTTTACCA GCAAATTAGT CGATGGTCGT
TTCCCCGATT ATCGCCGTGT GTTACCTAAG GGCGGTGATA AAATCGTTAT CGCCAGCCGT
AACCACTTTA AGCAAGCCTT AACCCGTGCC TCTATTTTAT CGAATGAGAA GTTTCGCGGT
GTACGCATTC AGTTAGAAGC GGGATTACTG AAAATCACCG CCAATAACCC AGAGCAGGAA
GAAGCGGAAG AAATCATCGA TGTGGATTAT AACAATCAGC CACTCGAAAT TGGTTTCAAC
GTCAGTTACT TATTGGATGT GCTAAACAAT CTTAAGTCCG ATGATGTGCG TATCACCTTA
ATCGATGGTA ACTCGAGTGC TTTATTGGAA AACCACTTGG AAGAAGATTC CATGTATGTG
GTTATGCCGA TGCGCTTATA G
 
Protein sequence
MKFSIDRDAL LKPLQLVCGA VERRHNLPIL ANLLVEVSGH SLKMTGTDLE VELVGQAVVH 
GDIEEGRTTV PAKKLLDIVK SLPEQSELKV EQQDNKWLLR SGRSRFSLAT LPAEEYPNVE
AFQAEIEFTL KQGVLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS
HRTIDAQLPE KQVIVPRKGV MEMARLLEAD DLDIAIAIGD NAIRATTSTT VFTSKLVDGR
FPDYRRVLPK GGDKIVIASR NHFKQALTRA SILSNEKFRG VRIQLEAGLL KITANNPEQE
EAEEIIDVDY NNQPLEIGFN VSYLLDVLNN LKSDDVRITL IDGNSSALLE NHLEEDSMYV
VMPMRL