Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3940 |
Symbol | |
ID | 4254503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4703556 |
End bp | 4705181 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638120588 |
Product | protein translocase subunit yidC |
Protein accession | YP_736060 |
Protein GI | 113972267 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000301662 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000640431 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG AATGCGACCA CTAATCACAG TGCTGATGTT CCAGAAGCAG ATACAGGTGT GCCAGCCGCA ATGACGGCAA CGCAAAATCT GATCACTGTT AAGACTGATC AGCTCGATGT ACAAATCAAC CCTGTGGGTG GTGACATCGT TTTTGCAGCT CTGGTTTCAC ATAAATTGGA ACAGGGTAAA GACCAGCCAT TTGTTTTGCT AGAGCAAACC AAAGATTTCA CCTATATCGC TCAGAGTGGC CTGATTGGCC GTGATGGTAT CGATAGCAGT GCTAAAGGTC GTGCCGCATT TGCTGCCAGC AAAACTGAAT TTACCTTAGC CGATGGCCAA GACACCTTAG AAGTACCATT GACCTATGTG GCTGATAACG GTGTGACTTA CACAAAAGTG TTTGTTTTCC ATCGTGGCAA GTTTAACGTT GATATCGATT ACAAAATCAA CAACACCTCA GCTGCTCCAT TGCAAGTTCA GATGTACGGT CAGATTAAAC AGACCATCAA GCCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC GCAGCGTTCT CGACTCAAGA TGTACGTTAC GAAAAGTACA AGTTTGAAGA TATGAGCAAG AGCAACCTCA ATCAACCGAC TCTCGGTGGT TGGGCGGCAA TGCTGCAACA TTACTTCGTA TCGGCTTGGA TTCCACCAGC AACCGATAGC AACACCATTT TCTCGAGTGT AAGTGCTGGC GGTTTAGCTA ACATTGGTTT CCGTGGCGCG GTATATGATA TTGCACCAGG TGCAACTCAA GAAATTAGCT CACAGTTTTA TGTTGGTCCT AAGGATCAAA AAGCGCTATC TGCGTTATCT GATACCTTAA ACCTGGTTGT TGATTACGGT TTCCTTTGGT GGTTAGCCGT TCCAATCCAC TGGTTATTGA TGTTCTATCA ATCATTTGTG GGTAACTGGG GTGTGGCGAT TATCCTGATC ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTGACTAAAG CGCAGTACAC CTCAATGGCG AAGATGCGTA ACCTACAGCC AAAACTGCAG GATTTGAAAG AACGCTTCGG CGATGACCGT CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTGAA CCCTATGGGT GGCTGTTTAC CTATCCTGCT ACAGATGCCA ATCTTCATTG CCTTGTACTG GGTATTGTTA GAAAGCTTCG AGCTGCGTCA CGCGCCATTT ATGTTATGGA TCCACGACTT ATCTGTACAA GATCCATACT ACATTCTGCC GCTGCTGATG GGTGCGTCTA TGTTTGTGAT GCAAAAAATG CAACCCATCG CACCGACTAT GGACCCAATG CAAGTGAAGA TGATGCAATG GATGCCTGTG ATCTTTACCG TATTCTTCCT GTGGTTCCCA TCGGGTCTAG TACTGTACTG GTTAGTGGGT AACATTGTTG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA AAATAA
|
Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTGVPAA MTATQNLITV KTDQLDVQIN PVGGDIVFAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG LIGRDGIDSS AKGRAAFAAS KTEFTLADGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV DIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTQDVRY EKYKFEDMSK SNLNQPTLGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGATQ EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GASMFVMQKM QPIAPTMDPM QVKMMQWMPV IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL K
|
| |