Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3939 |
Symbol | trmE |
ID | 4254502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4702090 |
End bp | 4703451 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120587 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_736059 |
Protein GI | 113972266 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000114268 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGACAACTG ACACTATCGT GGCACAGGCC ACCGCGCCCG GACGGGGCGG CGTGGGTATC ATTCGTATCT CTGGTGATAA GGCAACCGAT GTGGCCATGG CCGTATTGGG TCATTTACCT AAACCCCGTT ACGCCGATTA CTGCGACTTT AAAAATGCCT CAGGCCAAGT GATAGACCAA GGTATCGCCC TGTTTTTTAA AGGCCCTAAT TCCTTCACTG GTGAAGATGT ATTAGAGCTG CAGGGCCACG GTGGTCAAAT CGTCCTCGAT ATGCTGATCA AGCGCGTATT AGAAGTCGAA GGCATTCGTA TCGCCAAACC AGGCGAGTTT AGCGAACAAG CCTTTATGAA CGATAAGCTG GACTTAACCC AAGCCGAAGC GATTGCCGAC CTTATCGATG CCACCAGTGA GCAAGCCGCT AAAAGCGCGC TGCAATCACT GCAAGGTGAG TTTTCGAAGG AAGTTCATGA GCTAGTGGAT CAAGTCACCC ATCTGCGTTT ATACGTCGAA GCCGCGATTG ATTTCCCCGA TGAAGAAGTC GACTTTTTAA GTGATGGCAA AATTGCCAAC GCACTCTATA AAATCATCGA CAAACTCAGC GTCGTCCAAG CCAGTGCCAA GCAAGGCTCG ATTATCCGCG AAGGTATGAA AGTGGTGATT GCCGGTCGCC CCAATGCAGG AAAATCCAGT CTGCTTAATG CGCTCGCCGG TAAAGAGTCG GCGATTGTGA CCGAAATTGC AGGTACCACC CGCGACGTAT TGCGTGAGCA TATCCATTTA GATGGTATGC CACTGCATAT TATCGACACC GCAGGCCTGC GTGACACCAC AGATACGGTT GAACAAATCG GTATCGAGCG GGCGTGGAAC GAAATCAACA GCGCCGATCG CGTGTTGTTT ATGGTCGATG GCACCACTAC GGATGCGGTC GATCCCCACG ATATTTGGCC CGATTTTATT GATCGTCTCC CCGCTAATTT AGGCGTGACA GTTGTCCGCA ACAAAGCCGA TCTCACCGGT GAGAACCTCG CTATGACCGA AGAAAAAGGT TACAGCGTGT ATCGGATCTC GGCTAAAACC GGTCTGGGCG TCGAGGAATT AAAACAACAC CTTAAATCCT TGATGGGTTA TCAGAGTAAT CTCGAAGGTG GCTTTATCGC CCGTCGTCGT CACCTCGAAG CATTGGATGT TGCCGCAAGC CATCTTCAAC TCGGTAAAGA ACAATTAGAG ATTTACCTCG CAGGTGAACT GTTAGCGGAA GAACTGAGAA TGGCGCAATT AGCCCTGTCC GAAATCACAG GCCGCTTCAC CTCAGACGAT CTACTGGGCA AAATTTTCAG CTCATTCTGT ATCGGCAAAT AA
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Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKATD VAMAVLGHLP KPRYADYCDF KNASGQVIDQ GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVLEVE GIRIAKPGEF SEQAFMNDKL DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTHLRLYVE AAIDFPDEEV DFLSDGKIAN ALYKIIDKLS VVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF MVDGTTTDAV DPHDIWPDFI DRLPANLGVT VVRNKADLTG ENLAMTEEKG YSVYRISAKT GLGVEELKQH LKSLMGYQSN LEGGFIARRR HLEALDVAAS HLQLGKEQLE IYLAGELLAE ELRMAQLALS EITGRFTSDD LLGKIFSSFC IGK
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