| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3903 |
|---|
| Symbol | |
|---|
| ID | 4254466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4653731 |
|---|
| End bp | 4654573 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638120548 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_736023 |
|---|
| Protein GI | 113972230 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000174103 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.392188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAGA TTGGCAGACT CCCCAACAGC AGAGCCGCGC AGGCCTTTGT CGATTACCTT
AAAGGTGAAC AGATAGACTG CCAGATTCAG CCATTGCCGC AGGGAGTCGC TATTCTGGTT
ATCCGCGATC AAGATGCCGA GCAAGCCCGT AAAGAGTTCG CCCATTTTAT CGCTAATCCT
TACGATAACA AATACTTACA AGCCTCATGG GAGCATGGTG ATACTCATAC TAAGCTCGAC
TATGGCGCCC CTTCTTTACA GCTTTTTGCG CAATTTATCA CAGGTGCAGG CCCAGTTACT
CTTATCATCT TTGGCCTCTG TGTACTGATT TATGCCGCGA TGAATTTAGG CTTCGGCGGC
CCGGTTTATG AAACGCTCTC CTATTTCGGT GCAGTGCCTG ACACCAGTGT TAGTCAATTC
TGGCGCGTGT TTACCCCAAG CCTGATGCAC TTTTCGGCCA TGCATATCAT CTTCAACTTA
CTCTGGTGGT GGTATTTGGG TGGAAAAATC GAGACTCGCA TAGGTACAGC CCCGCTGTTA
ATCCTGCTAC TGGTCGCCGG TACTTTACCC AATGTCGTCC AATACTATGT TAGCGGCCCC
AACTTTGGCG GACTGTCGGG CGTAGTGTAT GCCGTCGCCG GTTACACTTG GGTCATGGGG
ATCCGTAAAC CCGCAGCAGG AATAGGTTTA CCGCCCTCCT ACATGGGATT TATGTTGATT
TGGCTGATGT TAGGCTTTAC GGATTTCTTA GGCGTGTCAG TTGCGAATGG CGCCCATATT
GGCGGATTAC TGATAGGTCT CGCCCAAGGC TGGTTCGATA GTCGCAGTAA AGCCACTCGC
TAA
|
|---|
| Protein sequence | MIEIGRLPNS RAAQAFVDYL KGEQIDCQIQ PLPQGVAILV IRDQDAEQAR KEFAHFIANP
YDNKYLQASW EHGDTHTKLD YGAPSLQLFA QFITGAGPVT LIIFGLCVLI YAAMNLGFGG
PVYETLSYFG AVPDTSVSQF WRVFTPSLMH FSAMHIIFNL LWWWYLGGKI ETRIGTAPLL
ILLLVAGTLP NVVQYYVSGP NFGGLSGVVY AVAGYTWVMG IRKPAAGIGL PPSYMGFMLI
WLMLGFTDFL GVSVANGAHI GGLLIGLAQG WFDSRSKATR
|
|---|
| |