| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3882 |
|---|
| Symbol | |
|---|
| ID | 4254445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4631866 |
|---|
| End bp | 4633590 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638120527 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_736002 |
|---|
| Protein GI | 113972209 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAT TGAATCGTCG TTTCAATAGC GAAGATTATT ATCAAGTACT CTGGCCGCTG
CTGTTGATGA GTTTGCTGAT CTTACTGGTT GGCATAGGTT TTCGTTCCCC TTGGCCTGCT
GACGAGCCGC GGTTTGTTGA GGTCGCGCGG GAAATGGTTG CCTCGGGCCA ATGGTTATTC
CCTACTCGGG GTGGGGAATA TTATCCCGAT AAGCCGCCAG TATTTATGTG GGCGATTGCC
CTGTTTTATC AACTCACGGG GTCGTTAAAA CTCTCCTTTT TACTCCCCAA TGCTTTCTGC
GGCTTGCTGA CGGTATTCCT TGTCTATGAT CTGGGTGCCA GATTGTGGAA TGTGCGTGTT
GGCCGCAACG CTGCACTATT GCTCCTTATC GTGCCGCAGT TTTTAATGCA GGCGAAAAAT
GCCCAGATAG ATGCCATGGT GATGTGCTGG ATAACCGTGG GATGTTACGG ATTAATCAGA
CATTTTATGC TTGGGCCTAA GTGGCATTGG TATTTTATTG GCTGGGCATT TATGGGGCTT
GGGGTGATCA CTAAGGGGGT TGGTTTCTTG CCCCTGTTGT TGCTCATTCC GATTGGGATT
TACGCCTTCA AAGATAAGAC CCGTTTCGAG GGCCGCTTAA CTTGGCTTTG CCTGGCGGGG
CCTCTGGCCA TGCTGGCTGT GATTGCCTGT TGGTTAGTGC CTATGGTGAT GACGGTTCAA
GCCCATGGCA CGCCCGAGAT GGTGGCCTAT CAAAATAATA TTTTGTTTAA GCAAACGGGC
GAGCGTTACG TCAATGCTTG GCACCATATC AAGCCATGGT ACTTCTTCGT GCTGAGCGTG
ATCCCTTGGA TGTGGTTCCC GATTTCGCTG CTGGTGGTCG CCTATTGGAA ACAGTGGCTG
CAAAAGGTAA AAGCCGATCC CACCATTGCG ATTCTGCTGA TTTGGGTCGG GCTCGTGGTG
CTGTTTTTCA GTATCAGCCC GGGCAAGCGC AACGTGTATA TTCTGCCCGC ATTACCTATG
TTGGCCCTCG CTGCGTCGGC GGTATTAACG GGTGTTTCAC CCAAAGCTTG GTTTGAAAAA
CTAGTCACTG GTGTGTTGTG GTTCTTGGGT GCGCTCGTGT TGGTGGCCGG TGTGCTGGCA
TTTATCCATC ACCCTGCGCT TGTCAAAGCG CTGGCGGACT ATACCGATGA TCTCACTGGC
ATTGGTTACT TATTTATTTT GCTCGGGGTG CTTTGGTGTG CCTTGCTGTG GCTGGCGCGT
CGTCAGTTTG CCCTGGTTAA GGTGGGGCTG GTTTCCGCCT TGGGCTGGGT GCTGGTGAGC
ACTTGGGGTT ATTCGATGCT CGATGAAATG CGCACCCCCA GAAGCCTGAT GCTACACACT
GCCGAGGTGA TAGGTGAGGA TGCCGAACTT GGCCTAGTAA ACTTCAAAGA GCAATTTATT
CTGTTCTCGC CCATGAGTGT GACGCACTTT AGTTATCTCG CGCCGGTAGA AGAGCAGGAG
CGTAACGCGT GGCAATGGAT GCAGGAGAAC AAACAGCGTT ATGTGTTAGT GCCTAGCGGT
GCCGAGCTGA GTTGTTTCGA TATCAAAGGC GGTAAGAGCA TGGGGATTGC CCACCGTGAC
GAATGGATTT TGTTATCTGC GTCAGAGCTT AAGCCTCAGT GCCAAGCGCC AGAGCGTGTT
TACCGCTACT TTACCGACCA TCCAGGTCGT TGGTTAAAAG AGTAA
|
|---|
| Protein sequence | MDALNRRFNS EDYYQVLWPL LLMSLLILLV GIGFRSPWPA DEPRFVEVAR EMVASGQWLF
PTRGGEYYPD KPPVFMWAIA LFYQLTGSLK LSFLLPNAFC GLLTVFLVYD LGARLWNVRV
GRNAALLLLI VPQFLMQAKN AQIDAMVMCW ITVGCYGLIR HFMLGPKWHW YFIGWAFMGL
GVITKGVGFL PLLLLIPIGI YAFKDKTRFE GRLTWLCLAG PLAMLAVIAC WLVPMVMTVQ
AHGTPEMVAY QNNILFKQTG ERYVNAWHHI KPWYFFVLSV IPWMWFPISL LVVAYWKQWL
QKVKADPTIA ILLIWVGLVV LFFSISPGKR NVYILPALPM LALAASAVLT GVSPKAWFEK
LVTGVLWFLG ALVLVAGVLA FIHHPALVKA LADYTDDLTG IGYLFILLGV LWCALLWLAR
RQFALVKVGL VSALGWVLVS TWGYSMLDEM RTPRSLMLHT AEVIGEDAEL GLVNFKEQFI
LFSPMSVTHF SYLAPVEEQE RNAWQWMQEN KQRYVLVPSG AELSCFDIKG GKSMGIAHRD
EWILLSASEL KPQCQAPERV YRYFTDHPGR WLKE
|
|---|
| |