| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3873 |
|---|
| Symbol | |
|---|
| ID | 4254436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4623114 |
|---|
| End bp | 4624544 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120518 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_735993 |
|---|
| Protein GI | 113972200 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.300143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGAAT TGGTCGCAAT TGAGTCAAAA TGTCCAGAAG TGAGCACTAT GAGCCAGATA
GATAATAACC TCAAGCCCCT TCCTTCCGCT GTGTCGGTCC TGATCGTCGA TGACGAACCG
GGGATGCGTA GCTTTTTGAA TAAGGCGCTC TCGAAGAAAT TCGCCTTAGT CGAAACGGCG
GGCAGTATTG AAGATGCTGA GCAGTTACGT AGTCGCTGCC ACTTCGACCT ATTGATTGTC
GATATCCGTT TACCGGGTCG CTCGGGTATC GAGTGGCACG AAGCCTTAGA TGAACAAGGC
CGCCGCTCCG ATGTCATTTT TATGACAGGC TATGCGGATT TAGAAGTCGC GATTAAAGCG
CTGCGAGCTG GCGCCTCAGA CTTTATTATG AAGCCCTTCC ATCTCGAGCA GATGATGTCG
GCGGTTGACC GTTGTATTGA ACGCCGTTTG CTGCGCCGCG AAAACTTGAT GCTGCGCCGT
GAGGTCTCCA TCGGCTATTC CTCTACCATT ATTGGCAGTA GCGAAGCCAT GAAGTCGGTC
AAGCAAGTGA TTGAGCGCGT GGCACCGACC AATGCCGTGG TGTTAATTCA AGGCGAATCG
GGCACGGGTA AAGAGCTGGT CGCGCGCCAA TTACACTTAC TCAGCGGCCG CCAAGGGCCA
TTTGTGCCCG TTAACTGCGG CTCGATTGCC CCCGAACTAC TGGAGAGTGA ACTCTTTGGC
CATACGGCGG GTGCTTTTAC TGGCGCAAAG GGAAATCGCG AAGGCTTATT CAGTTTTGCC
TCCGGCGGCA CTATTTTCCT CGATGAAATT GGTGAGATGC CCCTCAAGAT GCAGACGGCA
CTGCTCAGGG TATTAGAGCA AAAGGCGATT CGCCCCGTCG GCAGTGAGAA GGAAGTGAAT
ATCGATGTCC GGGTGATTGC GGCTACTAAC CGCACGCTGG TGGATGAAGT CGAGGCGGGT
AACTTCCGTC GTGATCTTTA TTATCGATTG AATGTGCTGG ATATTTTAAT TCCTCCCCTG
CGTGAGCGTC CGGAAGATGT GGTCGAATTG ACCCATCACT TTACTCGCCA GTTAGCGGCC
GAATTGGGTG TGCGTGAAGT CGTGTGGAGC CATGAGGATA TGGTGAAGCT GCAACAGCAC
GAGTGGCCAG GCAATATCCG TGAACTGCGC AATATGATTG AACGCTGCAT TCTGCTCGGC
AAGCCGCCAG CGGAATACTG GAAACAACAG GTGAAGACAG AGTCTTCGGC TTCTCAGGGT
TATCCCTTAG ATTGGCCGTT GAAAGAAGTG GAAAAACACC ATGTGACCAG TGTGGTGGAT
CTGCACTCTG GCAATAAATC GGCGGCGGCG AGGGACTTAG GCGTTTCCCG TAAGACCTTA
GATCGCAAGT ATAAAGAGTG GTTTGACGTT AGCGACGAGC AGGAGTTCTA A
|
|---|
| Protein sequence | MLELVAIESK CPEVSTMSQI DNNLKPLPSA VSVLIVDDEP GMRSFLNKAL SKKFALVETA
GSIEDAEQLR SRCHFDLLIV DIRLPGRSGI EWHEALDEQG RRSDVIFMTG YADLEVAIKA
LRAGASDFIM KPFHLEQMMS AVDRCIERRL LRRENLMLRR EVSIGYSSTI IGSSEAMKSV
KQVIERVAPT NAVVLIQGES GTGKELVARQ LHLLSGRQGP FVPVNCGSIA PELLESELFG
HTAGAFTGAK GNREGLFSFA SGGTIFLDEI GEMPLKMQTA LLRVLEQKAI RPVGSEKEVN
IDVRVIAATN RTLVDEVEAG NFRRDLYYRL NVLDILIPPL RERPEDVVEL THHFTRQLAA
ELGVREVVWS HEDMVKLQQH EWPGNIRELR NMIERCILLG KPPAEYWKQQ VKTESSASQG
YPLDWPLKEV EKHHVTSVVD LHSGNKSAAA RDLGVSRKTL DRKYKEWFDV SDEQEF
|
|---|
| |