Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3847 |
Symbol | |
ID | 4254410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4593935 |
End bp | 4595431 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120492 |
Product | sodium/proline symporter |
Protein accession | YP_735967 |
Protein GI | 113972174 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCCC TCTCTTACAT TTCATTGGCA ATTTACTTTA TTGCCATGCT CGCCATTGGT TTGTTCGCCT ATCGCAAGTC GACCGATGAT GTCTCTGGCT ATATTTTGGG TGGCCGCCAA GTCAGCCCGC AAGTCACGGC TCTCTCGGCC GGTGCCTCGG ATATGAGTGG CTGGATGCTG ATGGGCCTTC CCGGCGCCAT GTTTCTGGTG GGGTTTGAAA CCCTCTACAT TGCCCTCGGA TTATTAATTG GTGCTCTAAT TAATTATTTG GTAGTTGCCC CCAAATTGCG GGTCTACACA GAAGTCGCCG ATAACGCGCT GACTATCCCT GAGTTCTTCG CCAAACGCTT TGGTCAGGCC GATAACAGCA TCCGTATTAT TGCCGCGGTG ATCATAGTGA TCTTTTTCAC CCTCTATACC TCGGCAGGAT TAGTCGCGGG CGGCAAGTTA TTCGAATCTG CCTTTGGACT GAACTACGAT ATTGGCCTAG TCGTTACCTT AGCCGTAGTG GTGTCGTACA CTCTGCTTGG GGGATTTTTA GCCGTCAGCC TCACCGACTT TGTACAGGGC TGCATTATGT TTGTCGCCTT GGTCTTAGTG CCTTTCGTGG CATATCAAGA ATTTACCAGC GCAGATCGCA TGATGAACTT TGCCTATCAG TCGATCCCGC ATTTTACCGA CGCGATGCAA AATGTGACCC TGCTTGGCTT AATCTCGAGC CTTTCTTGGG GACTTGGGTA TTTCGGTCAG CCGCATATTA TTGTGCGTTT TATGGCGATC CGTTCCGTCG CCGACATTAA AACCGCACGA CGCATTGGCA TCAGCTGGAT GACAGTCACC ATAATCGGCG CCTTAGCGAC GGGCTTGGTC GGTATCGCCT ACGCCAATAA ATTTGGCATG AAGCTTTCGG ATCCTGAAAC CATCTTTATC GTGTTTTCAG AGTTACTGTT CCATCCCTTG GTTAGTGGCT TCCTGTTGGC AGCGATTTTG GCAGCGATTA TGAGCACGAT TTCATCGCAG TTATTGGTCT CGTCGAGTTC GCTCACCGAA GATATTTACC GCACCCTCTC AAAGAAAGAC TCGAGCGAAA AAGAGATGGT GAAAATGGGC CGTTACGGGG TTGCAGGTGT TGCCATTGCC GCAACGCTGC TGGCACTCGA CCGCTCGAAC AGTATCCTCT CCCTCGTGAG TAATGCTTGG GCAGGATTTG GCGCCGCCTT CGGTCCGCTG GTGTTATTTA GTTTGTATAA AGCCAATCTC ACCCATAAAG CGGCGATTGC GGGGATTATT TCGGGCGCGC TTACGGTACT CTTTTGGATT TATGCCCCCG TGCTTGCCGA TGGTAAGGCA TTGAGTAGCT TAGTGTATGA GATGATCCCT GGCTTTGTGG TCAGCAGCAC AGTGATTTAT CTGGTGAGCA AATTCGATAA CGATCCTTGT CCTAAAACCA CTAAGCAATT CCATCAGGCC GGTCGTGTAT TGGCCGAGGA AAGCTAA
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Protein sequence | MNSLSYISLA IYFIAMLAIG LFAYRKSTDD VSGYILGGRQ VSPQVTALSA GASDMSGWML MGLPGAMFLV GFETLYIALG LLIGALINYL VVAPKLRVYT EVADNALTIP EFFAKRFGQA DNSIRIIAAV IIVIFFTLYT SAGLVAGGKL FESAFGLNYD IGLVVTLAVV VSYTLLGGFL AVSLTDFVQG CIMFVALVLV PFVAYQEFTS ADRMMNFAYQ SIPHFTDAMQ NVTLLGLISS LSWGLGYFGQ PHIIVRFMAI RSVADIKTAR RIGISWMTVT IIGALATGLV GIAYANKFGM KLSDPETIFI VFSELLFHPL VSGFLLAAIL AAIMSTISSQ LLVSSSSLTE DIYRTLSKKD SSEKEMVKMG RYGVAGVAIA ATLLALDRSN SILSLVSNAW AGFGAAFGPL VLFSLYKANL THKAAIAGII SGALTVLFWI YAPVLADGKA LSSLVYEMIP GFVVSSTVIY LVSKFDNDPC PKTTKQFHQA GRVLAEES
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