| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3830 |
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| Symbol | |
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| ID | 4254393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4573586 |
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| End bp | 4574305 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120475 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_735950 |
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| Protein GI | 113972157 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.582426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGCAA CGTATTCTTC GCCACTTTGC CTTAAGTCGA TAGCCACCGT TAGCCTTGGT
TTGTGGTTGG CTTGGGGAAG TGTTGCGGCC GCGTTTGCCG ACGAAGCTAA GCCTAAGCCC
CGTATTGTGG CCCGTTATTC TGAAAGCGGT ATTGTGAGTA ACACTGGGCA AGAAAAAGTC
AAAGTTTATC AATATCTACA GGCCAATGGT GTCACGGCTT TTACCGATAA AGCGCCGACC
ACCAATGAGT ATCAAATCCT GCTCTATGAC TGCTTTGCCT GTCGTCCTGA CTCCAAAATT
GACTGGAATG GTATTCGGCT GTTTACCCGC AATTACGATA GCTTGATCAG CCGTGCGGCC
CATAAACATC AATTAGACCC TGCACTTATC CGCGCCGTGA TCCACGCCGA ATCGGCCTTT
AATGCCAGAG CCTTGTCGCG TACAGGCGCA ATGGGCCTGA TGCAATTAAT GCCCGAAACC
GCCAAAGAGA TGGGCGTGAC CAATGCCTTT TTGCCGGAGG AGAATATTCT CGGCGGCAGT
AAGTATTTGG CGCAAATGCT AAAACAGTTC AATGGTGATA TTGCGCTAGC CTGCGCGGCC
TATAATGCGG GGCCTACAAC TGTGACTCAG TACAACGGTA TTCCGCCCTA TCCAGAAACC
CAAGCCTATG TGGAACGGGT GCAAATTCTG CTAAAACGTT ACCGCAGCGC CAAAGTCTAG
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| Protein sequence | MSATYSSPLC LKSIATVSLG LWLAWGSVAA AFADEAKPKP RIVARYSESG IVSNTGQEKV
KVYQYLQANG VTAFTDKAPT TNEYQILLYD CFACRPDSKI DWNGIRLFTR NYDSLISRAA
HKHQLDPALI RAVIHAESAF NARALSRTGA MGLMQLMPET AKEMGVTNAF LPEENILGGS
KYLAQMLKQF NGDIALACAA YNAGPTTVTQ YNGIPPYPET QAYVERVQIL LKRYRSAKV
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