| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3748 |
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| Symbol | |
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| ID | 4254311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4480415 |
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| End bp | 4482535 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120393 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_735868 |
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| Protein GI | 113972075 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGAT GGCAACACTT GCTCAATAAA CTCAGTACAG ATGACCCTGT ATTGCAAGAT
AAGCTGTCAT GCTGGCAAGC CGATCCGCAC CAGACTCCCC TCGCCCTAAT CCAAGGCTTT
AGTTTTATTA GCGCAAATAG CGCCACCCTC GATTACTTTG GCACCGAATA CGATGCCTTA
GTGAATACCA CGCCCTATGA CTTTTCACCT AGGATCCAAT CCTCCGGACG CAATAGCGTT
GAATTTGCAC GGGAAATGAT TATTGAGGCG GCATCGGGGA ACCATGTCGA ATTTAGTTGG
CTCCACCTGA GCCAACAGGG TAAAGAACTC CCCACCAAGG TAAGACTCTA CCCTTGTTAT
TTACAGCAAC AAGCCGTAGT GCTCGTTGAG CTACAAGCCC TCAACCGTCG AACTCAAGTT
CGGCCGTCGA TCTCCGATGG CTTTGCCCAT ATCCCACGGG AAATTATGGC GACCACACTT
GAAGAGAGTG CCGAGGCCGT TTACATCACC GATGCTGATA ATCGCATATT GGCCGTAAAC
AAGGCTATGT GCCGTATCTG CGGTTACAGT GCCGAGCAAT TGATCGGTAA AACCCCTGAG
TTTTTAGAGG CCAAACTCCT GCCACCAGGG CAAGAAACCG ATTGCCAAGC CGCCATGAAA
CTTCGGGGAT TTTGGCATGG TGAGACGCTT AAACAGCGAT CTGACGGGAG CCACTTTCCT
GCATGGCAGA GCAGTCGCCG AATCGAGACC GATGACAACG CCCTATATCA TGTGAATATT
TTCAGCGATA TCAGCACCAA AAAACTGCTC GAAACGCAGC TCACCACCCG TGCTATGTAC
GACACATTAA CGGGGTTGCC GAACCGTTAT CATCTCAAGC AAATACTCAA TAGCGCCCTC
GATAAACTGA AGGATGATCC TTCCGCCCTC GGCGCACTGA TGTTTTTAGA CCTCAATGGT
TTTAAGAACA TCAATGACAG CTTTGGTCAT TCCATGGGTG ACAGGGTGTT ACAACTGGTG
GCCGCGCGTT TAGAAGCGGG CTGCATTGAG AAGGCCGATA TCGCCCGTAT GGGGGGCGAT
GAGTTTACCT TAGTGCTGCA GGAATGCAGC TGTAAGGAAG AAATTCAATT ATTTGCCGAG
CAAATACTGA GCCTATTCGA CAGTCCATTT GAAATCGAAG GGCAGAAGTT CTTCCTCGGT
ACCAGTATTG GTATCGCGCT GTTCCCAACC CACAGCGATC AAGCGGGACA GCTGATTAGC
TTAGCCGATA CCGCCATGTA TAGCGCGAAG AAAAATCAGC CGCACTTAGT CTTTTATGAC
AAGGTGATGA GCCAAGCAGC TGAGCTTAAA TTAAAGCTTA TCAACAATCT AAGGCATGCC
CATAGCCTCA AACAGTTCAA TCTTGCCTAT CAGGCGATAG TGGATTTACA TACCAATAAG
CCCATAGGTG CCGAGGCGTT ACTGCGTTGG CAAAAATCCC CCAACGAGCA TTATGAAGCG
GCCGAGTTCG TCCCTTTACT CGAGGAAACA GGGCTGATTA TTACCATTGG GCAATGGGCA
CTGGAGCAAG CCTGTAAGCA GGCCGCCATA TGGCGCGCGA GTTATCAGCC TGATTTTAAA
GTGTCGGTTA ACGTATCGCC CTTACAGTTG GAGCATGTGG ATTTTGTCGG CCAAGTGATT
AGCGCCCTAG AAATGGTCGC CCTGCCCGCC GAAGCGCTGA TTTTAGAAAT CACCGAGTCA
GCGCTGTTAC GTCAACCCGA GTTAGCGCGC CAGACCCTTG AGCGCATCAA AGCCTTAGGT
GTCGGCATCG CCATTGACGA CTTTGGCACA GGTCTCTCAT CACTCAGCCG TTTAGGAACC
TTACCGATAG ACAGTGTCAA AATTGATGCT GAATTTGCTC TGCGTTTACA TGATGCCTCG
GGACAAAAAC TTTGCCATGC CATAGTGCAA TTAGCACAGG CTCTCGACAT TCACTTTGTG
GCAGAAGGCA TTGAAACACA GCAGCAAAAA GACATCATTA CCCATATGGG ACAAGGTTTT
GCGCAAGGCT TTTTGTTTGG CTATCCCAGC TCGGTTGAAC AGTTTACTCA AGCCTTTTTA
GCCGAAAGGT GTATCGCTTA A
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| Protein sequence | MIRWQHLLNK LSTDDPVLQD KLSCWQADPH QTPLALIQGF SFISANSATL DYFGTEYDAL
VNTTPYDFSP RIQSSGRNSV EFAREMIIEA ASGNHVEFSW LHLSQQGKEL PTKVRLYPCY
LQQQAVVLVE LQALNRRTQV RPSISDGFAH IPREIMATTL EESAEAVYIT DADNRILAVN
KAMCRICGYS AEQLIGKTPE FLEAKLLPPG QETDCQAAMK LRGFWHGETL KQRSDGSHFP
AWQSSRRIET DDNALYHVNI FSDISTKKLL ETQLTTRAMY DTLTGLPNRY HLKQILNSAL
DKLKDDPSAL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLVLQECS CKEEIQLFAE QILSLFDSPF EIEGQKFFLG TSIGIALFPT HSDQAGQLIS
LADTAMYSAK KNQPHLVFYD KVMSQAAELK LKLINNLRHA HSLKQFNLAY QAIVDLHTNK
PIGAEALLRW QKSPNEHYEA AEFVPLLEET GLIITIGQWA LEQACKQAAI WRASYQPDFK
VSVNVSPLQL EHVDFVGQVI SALEMVALPA EALILEITES ALLRQPELAR QTLERIKALG
VGIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLHDAS GQKLCHAIVQ LAQALDIHFV
AEGIETQQQK DIITHMGQGF AQGFLFGYPS SVEQFTQAFL AERCIA
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