| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3629 |
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| Symbol | prpB |
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| ID | 4254193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4336142 |
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| End bp | 4337020 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638120272 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_735750 |
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| Protein GI | 113971957 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAA GCGCAGGATT ACGTTTTCGC CAAGCTCTTG CTAACTCAAA ACCGCTGCAA
ATCGTCGGCA CCACTAATGC CTATTTCGCC CTGATGGCGG AGCAAACGGG TTTCCAAGCC
CTGTATCTGT CGGGCGCGGG TGTAGCGAAC GCCTCCTACG GTTTACCGGA TTTAGGCATG
ACCTCGATGA ATGACGTGCT GATCGATGCC GGTCGTATCA CTTCGGCAAC CCAACTGCCA
CTGCTGGTCG ATATCGACAC AGGTTGGGGC GGCGCTTTCA ACATCGCCCG CACCATTAAA
GAATTTGAAA AAGCAGGTGT TGCCGCCGTG CACATGGAAG ACCAAGTGTC GCAAAAGCGT
TGTGGCCACA GACCCAACAA AGCGGTCGTC AGCACAGAGG AAATGGTTGA CCGTATCAAG
GCCGCCGTCG ATGCCCGTAC CGATCCTAAC TTTGTAATCA TGGCGCGCAC CGATGCGGTT
GCCGTTGAAG GTTTAGAAGC GGGTATCGAA CGTGCAAAAG CCTATATCGC CGCGGGTGCC
GATATGATTT TCGCCGAAGC CTTAACTGAG CTGGACCAAT ACCGTCACTT CAAGGCTCAG
GTGAACGCGC CGATTCTGGC GAACATGACC GAATTTGGCC AAACCCAACT GTTCAACAAA
GAAGAACTTG CCGCAGCGGG CGCCGACATG GTGCTTTACC CACTCGGCAC TTTCCGCGCC
GCTAACCAAG CCGCACTGAA AGTGATGCAA GCGCTGATGA ATGATGGTCA TCAACGCAAT
GTCTTAGACA CTATGCAGAC CCGTGCGGAT CTGTATAAGT ACTTGGGCTA CCACGCCTTT
GAAGACAAGT TAGATCAATT GTTTAGCCAA GATAAGTAA
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| Protein sequence | MTQSAGLRFR QALANSKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM
TSMNDVLIDA GRITSATQLP LLVDIDTGWG GAFNIARTIK EFEKAGVAAV HMEDQVSQKR
CGHRPNKAVV STEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAKAYIAAGA
DMIFAEALTE LDQYRHFKAQ VNAPILANMT EFGQTQLFNK EELAAAGADM VLYPLGTFRA
ANQAALKVMQ ALMNDGHQRN VLDTMQTRAD LYKYLGYHAF EDKLDQLFSQ DK
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