| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3486 |
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| Symbol | |
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| ID | 4254052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4169875 |
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| End bp | 4171560 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120124 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_735609 |
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| Protein GI | 113971816 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.552648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCCA TTAAATATAT TACGCCTCTA CTCTCACTTT GCCTTATGGC CTGCCAAACC
ACGGATAGAC CGCAGCCCGT TGCTTCAAAA GAAGCACTGG CCACCTCGAT GCAAACCGCG
AGTCAGCCAA CGCCTCCACC ACCAGCCACT ATGCCCGATG CGGTGCAGCG TGAGCTGAAT
GCCAATGCCA TGATGGGTGG ATTAACTCCG CCAATGGAGA CGGAGCGTCG TATCGATGTG
TCTGCCCATG ATGTGGATGC GAGGGTGTTT TTCCCAAGCC TTGTGCAGGG CACCCCCTTT
AGCGTGGCTG TGCACCCCGA TGTGCAGGGC ACGATTTCAT TGTCACTCAA AGGCGTGACA
CTGAGTGAAG CCATTCAAGT GGTGGAAGAT ATTTATGGTT ATGAGGTGAG CCGTGAAGGG
CGCATCCTGC GCGTGTTCCC TGCGGGCATG CGGACTGAGA CTTTCCCATT AAATTACTTA
TACATGGAGC GTGATGGTCT ATCGTTGACC TCTGTGAGTT CTGGCAGGAT TTCCGACAAT
AACAACTCGA ATAACAATAA CTCCAATAAC AACAATTCGA ACAACGGCAA TTTTGGCAAT
AACAGCAACA ATAACAATTC CAACAACGGT AATTACGGCA ACAATAACAG CAGCGATAGC
ACTAACGGCA CCTTTATTCG CTCGCGCACT AAGACCGATT TTTGGGGCGA ATTGAAAGAA
ACCTTGAGCG CCATTATTGG TGACACTGGT GGCGGTCGTC AGGTGGTGGT GACGCCACAG
GCGGGATTAG TGACTATTCG TGCCTACCCT AATGAGTTAC GTCAGGTGCG TGCCTTTTTA
AATTCTGCCG AGAGCCATCT GCAACGCCAA GTGATCCTCG AAGCGAAGAT CCTCGAAGTC
ACTTTGTCTG ATGGTTATCA GCAAGGTATT CAGTGGGATA ACGTATTGGG CCATGTAGGT
AATACCAATA TCAATTTTGG TACCTCTGCG GGCGCAGGCT TGAGCGATAA AATCACCGCC
TCCCTCGGTG GCGTGACGTC TTTAAGCATT AAAGGCTCAG ATTTCAATAC CATGATTAGC
CTGCTCGACA CCCAAGGCGA TGTGGACGTG TTGTCTAGCC CAAGGGTGAC GGCATCGAAC
AACCAAAAAG CGGTGATTAA GGTCGGTACC GACGAGTACT TTGTGACTGA CGTGTCATCG
ACCACAGTGG CGGGCACTAC ACCTGTAACC ACGCCTCAGG TAGAGTTAAC GCCGTTTTTC
TCGGGTATCG CGTTGGATGT GACGCCGCAA ATCGACAAAG ACGGTAATGT ACTGCTCCAT
GTGCATCCTT CAGTTATTGA TGTAAAAGAA CAAACCAAGG ACATTAAGGT CAGCAGCGAA
TCCTTAGAAC TGCCGCTAGC ACAGAGCGAG ATCCGCGAAT CCGATACCGT TATCCGCGCG
GCTTCTGGCG ATGTGGTGGT GATCGGTGGT TTGATGAAGA GCGAAAATAC CGAAGTGGTT
TCTCAAGTGC CGCTGCTCGG TGATATTCCG CTCGTGGGCG AATTATTTAA AAACCGCAGC
AAGCAGAAGA AGAAAACCGA GCTGATTATT ATGCTAAAGC CGACCGTTGT AGGCGGGGAT
ACGTGGAAAA ACGAGTTAGA GCGTTCTAAG ACCTTACTCG ACCGTTGGTA TCCAGAAAAT
AAGTAA
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| Protein sequence | MTAIKYITPL LSLCLMACQT TDRPQPVASK EALATSMQTA SQPTPPPPAT MPDAVQRELN
ANAMMGGLTP PMETERRIDV SAHDVDARVF FPSLVQGTPF SVAVHPDVQG TISLSLKGVT
LSEAIQVVED IYGYEVSREG RILRVFPAGM RTETFPLNYL YMERDGLSLT SVSSGRISDN
NNSNNNNSNN NNSNNGNFGN NSNNNNSNNG NYGNNNSSDS TNGTFIRSRT KTDFWGELKE
TLSAIIGDTG GGRQVVVTPQ AGLVTIRAYP NELRQVRAFL NSAESHLQRQ VILEAKILEV
TLSDGYQQGI QWDNVLGHVG NTNINFGTSA GAGLSDKITA SLGGVTSLSI KGSDFNTMIS
LLDTQGDVDV LSSPRVTASN NQKAVIKVGT DEYFVTDVSS TTVAGTTPVT TPQVELTPFF
SGIALDVTPQ IDKDGNVLLH VHPSVIDVKE QTKDIKVSSE SLELPLAQSE IRESDTVIRA
ASGDVVVIGG LMKSENTEVV SQVPLLGDIP LVGELFKNRS KQKKKTELII MLKPTVVGGD
TWKNELERSK TLLDRWYPEN K
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