| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3437 |
|---|
| Symbol | metF |
|---|
| ID | 4254003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4108271 |
|---|
| End bp | 4109164 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638120075 |
|---|
| Product | 5,10-methylenetetrahydrofolate reductase |
|---|
| Protein accession | YP_735560 |
|---|
| Protein GI | 113971767 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0685] 5,10-methylenetetrahydrofolate reductase |
|---|
| TIGRFAM ID | [TIGR00676] 5,10-methylenetetrahydrofolate reductase, prokaryotic form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTC ATCACGCACA ACATTCACAT TCGCTAAACC AAAGTTTGTC TGAACTTAAT
GGCGATATTA ATGTTTCTTT TGAGTTTTTC CCGCCATCAA CCCCCGAAAT GGAACAGATC
CTGTGGAACT CTATCCGCCG TTTAGAGCCG CTGAATCCAA AGTTTGTTTC AGTGACCTAT
GGTGCCAACT CGGGCGTGCG TGACCGCACC CATGGTGTGA TTGAACGTAT TCAAAAAGAA
ACCAATCTGG TTGCCGCGCC GCATTTAACC TTAGTGGATG CCAGCGACGA AGAATTGTTA
GATCTGGCGA AGCATTACTG GAAATCGGGG ATCCGCGACA TAGTGGCACT GCGTGGCGAT
TTACCAGCGG GCAGCCCGAA ACCAACTCGC TTTGCGGCGG ATTTAGTGCG CTTACTGCGC
TCAGTGGCCG ACTTTGATAT TTCGGTCGCC GCTTACCCAG AAGTGCATCC AGATGCGGCT
AATGCTCAGG CCGATTTGAT TAACCTTAAG CGTAAAATCG ATGCCGGTGC GAGCCGTGCT
ATTACCCAGT TTTTCTTCGA TGTTGAATCT TACCTGCGTT TTCGCGACCG CTGCGTTGCG
GCGGGAATTG ATGTCGAAAT CGTCCCCGGC ATTTTACCCG TGACTAACTT TACCCAGTTA
AAACGCTTCG CGGGCATGAC CAATGTGAGC CTACCGAGCT GGCTGCATAA GCAGTTCGAT
GGCCTAGAGA ATGATGCGGG CACGCGTCAG CTGGTGGGGG CTAACGTGGC GATCGATATG
GTCAAAGTCC TATCCCGTGA AGGGGTGAAG GATTTCCACT TCTACACCCT CAACCGCGCC
GAGCTGACCT ATGCGATTTG CCATACCTTA GGGGTTCGCC CAAAGGCGGT ATAA
|
|---|
| Protein sequence | MAFHHAQHSH SLNQSLSELN GDINVSFEFF PPSTPEMEQI LWNSIRRLEP LNPKFVSVTY
GANSGVRDRT HGVIERIQKE TNLVAAPHLT LVDASDEELL DLAKHYWKSG IRDIVALRGD
LPAGSPKPTR FAADLVRLLR SVADFDISVA AYPEVHPDAA NAQADLINLK RKIDAGASRA
ITQFFFDVES YLRFRDRCVA AGIDVEIVPG ILPVTNFTQL KRFAGMTNVS LPSWLHKQFD
GLENDAGTRQ LVGANVAIDM VKVLSREGVK DFHFYTLNRA ELTYAICHTL GVRPKAV
|
|---|
| |