| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3411 |
|---|
| Symbol | |
|---|
| ID | 4253977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4073097 |
|---|
| End bp | 4074095 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638120049 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_735534 |
|---|
| Protein GI | 113971741 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02824] putative NAD(P)H quinone oxidoreductase, PIG3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0690188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAT TACCCCATGA TTACACGCAT ATTTATCTTG AGCAGCCCGG CGAGCCTGAG
GTGATGCAGC TGACACGCTC GCCATTGCCC GTACTGAGTG CTGGCCAAGT CTTAATTCGT
AACTGTGCCG TCGGGGTAAA TGGTCCCGAT ATCAAACAAA GGATGGGAAT GTATCCGCCA
CCACCTGGGG CCTCGCCGAT TATTGGGCTG GAAGTTGCGG GGGAGATCTG CGCCTTAGGC
GACGGCGTGA CCCAATGGCA ACTGGGGGAT AAGGTTTGCG CCTTAGTGCC CGGCGGTGGC
TATGGTGAGT ATACCTTGAC CTATGCAGTC CATTGTTTAC CTATCCCACA GGGCTTTTCT
GAGGTGCAAG CCGCGGCGCT GCCCGAAACC TTTTTCACTG TGTGGGGCAA CCTCTTTATG
CGCGCGGGAC TCAAGGCGGG TGAAACCGTG TTGATCCACG GCGGCTCGGG TGGCATTGGC
AGCACGGCGA TTTCCCTTGC TAAGCACCTT GGTGCGACCG TGATTACGAC CACGGGGCAG
GATGAAAAGC GCGACTATTG CTCGGGATTA GGCGCCCATC TGGTGGTGAA TTACAACACC
CAAAATTTTG TTGAAGAAGT CATGGCCTTT ACTCAGGGTA AAGGCGTCAA TGTGGTGTTT
GATATCGCTG GTGGTGACTT TATCAACTTG AATCTTCAAG CATTAGCCTT GGATGGCCGC
ATGGTGTCGG TGTCGACTCA GCGTAGTGCC AAGGCTGAAG TGAACATTCT GCAGCTGATG
GCCAAACGTA TTGTGTGGAC TGGCTCGACC TTAAGACCTC AGACCGTAGA GGCAAAAGCC
GAAATCGCCA AGCAATTAGC CGAGCATGTT TGGCCTTTGC TCGATAGCCA GCAAATCGTG
CCGCATATCT GTGCCACCTT TCCTCTGGCC GAGGCTGCTA AGGCCCATGC GCTGATGCAA
TCGGGAGAAC ATAGAGGCAA AGTCGTATTA ACCTTGTGA
|
|---|
| Protein sequence | MSELPHDYTH IYLEQPGEPE VMQLTRSPLP VLSAGQVLIR NCAVGVNGPD IKQRMGMYPP
PPGASPIIGL EVAGEICALG DGVTQWQLGD KVCALVPGGG YGEYTLTYAV HCLPIPQGFS
EVQAAALPET FFTVWGNLFM RAGLKAGETV LIHGGSGGIG STAISLAKHL GATVITTTGQ
DEKRDYCSGL GAHLVVNYNT QNFVEEVMAF TQGKGVNVVF DIAGGDFINL NLQALALDGR
MVSVSTQRSA KAEVNILQLM AKRIVWTGST LRPQTVEAKA EIAKQLAEHV WPLLDSQQIV
PHICATFPLA EAAKAHALMQ SGEHRGKVVL TL
|
|---|
| |