| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3400 |
|---|
| Symbol | |
|---|
| ID | 4253966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4058833 |
|---|
| End bp | 4059825 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638120038 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_735523 |
|---|
| Protein GI | 113971730 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000882722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTG AAGACCTGGC GCTATTTCAC CGAATTGCCG AAACCGGCAG TTTGATCGAA
GCTGCTGATT TACTTAACTT ACCTAAATCG ACTGTCAGCC GCCGTTTGCA GGCATTGGAA
GATGAGCTGA ATATCAAGCT ATTCCACCGC CAAAGCCGCT CGATGACGCT CACCTCGGCT
GGAAGCCATT TTTACCAACG TTCCTTGAAT ATCTTGGCCC AGCTCGATGA AACCCTATTC
GAGATGACCA ATGATGATGC CGAGATCAGC GGGCATCTTC GTATCCAAAT GTTCCCCATT
CACAGTATGA ACGTGCTGAT GCGGGCGATT TTCCGTTTTA TGGATCTGCA TCCCAAGCTA
ACGGTAGAAG TGATCAACAG TGCTGAAGCC GTTGATATGG TGAAGAATAA CCTCGATGTA
GCCTTTGTGG TCGAGCCGGC ACTGGACACC TTAGATTTAG TGGTGCGGCC AATCTTCACC
ACGGATCTGC GCTTTTATGC CAGCCCCGAT TACCTAGCGA AGCATGGCAC ACCTAAGACC
TCGCAGGAGA TCGAATCTCA CAATGTGTCT TTGTTTAGAC TCTCAAACGG CAAAATCTTC
AATGAGTTAT GGATTGGAGA GGAGCAAGCG GTCAGGGTTC GCGGCAATTT TTGCTCCAAC
AGTGTGCAGG TCGCCGTCGA ATTTGCCCTG CAAGGGCGAG GCATAGTGTA TGCCCCGACC
GAAGTGGTGA GTGAATATGT GACCGCAGGG CAGCTAGTCA CCCTGTTACC CGAGATTGAA
CCACATCCTG GGGAATGTTA TTTGGCTTAT CCATCAAGAC GTTATGTTAG TCTTGCCAGC
CGACGCTTTA TCGACTTCAT CATACAAGAG TTAGCGCCTA ATGGCGTACC GACGAATATG
AGTGCCGACG GCAATTCAGC TCGCCGTTGC AAACCCTCGG AAGAACCATT TCCGCCCAAT
GATGTCCGTT TTTGCCTCAA AAGCATCACC TAA
|
|---|
| Protein sequence | MKTEDLALFH RIAETGSLIE AADLLNLPKS TVSRRLQALE DELNIKLFHR QSRSMTLTSA
GSHFYQRSLN ILAQLDETLF EMTNDDAEIS GHLRIQMFPI HSMNVLMRAI FRFMDLHPKL
TVEVINSAEA VDMVKNNLDV AFVVEPALDT LDLVVRPIFT TDLRFYASPD YLAKHGTPKT
SQEIESHNVS LFRLSNGKIF NELWIGEEQA VRVRGNFCSN SVQVAVEFAL QGRGIVYAPT
EVVSEYVTAG QLVTLLPEIE PHPGECYLAY PSRRYVSLAS RRFIDFIIQE LAPNGVPTNM
SADGNSARRC KPSEEPFPPN DVRFCLKSIT
|
|---|
| |