| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3358 |
|---|
| Symbol | |
|---|
| ID | 4253924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4005597 |
|---|
| End bp | 4006655 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638119996 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_735481 |
|---|
| Protein GI | 113971688 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0607485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTACC AAAATGATGA CGTTCGCATT AATGAAGTCA AAGAGTTACT TCCACCAATT
GCGATTCTAG AACGATTTCC TGCCTCCGAA AACGCTGCTG CAACTGTGTT TAACGCCCGT
CAAAGCATTC ATAACATTCT TGCCCGCCAA GATGATCGTT TGTTAGTGGT CATTGGTCCT
TGCTCAATTC ACGATCCTAA GGCCGCATTG GAATATGGCC AGCGATTGGT TGCGCTCAGA
GAACGTTATC AAGATCAGCT CGAAGTGGTG ATGCGTGTTT ATTTTGAAAA GCCGCGTACT
ACAGTGGGTT GGAAGGGACT CATCAACGAT CCTTATATGG ATAACAGCTT CAAACTGAAC
GATGGTTTGC GTACCGCGCG TAAACTTTTA GTCGATTTGA ATGACTCTGG CATGCCGACC
GCGGGTGAGT TTCTCGATAT GATCACTCCG CAATATGTGG CGGATATGAT GTGCTGGGGC
GCGATTGGTG CGCGCACCAC TGAATCGCAG GTGCACCGTG AATTAGCGTC TGGGTTGTCT
TGCCCTGTAG GCTTTAAAAA TGGCACCGAC GGCACGATCA AGGTGGCGAT TGATGCCATT
GGCGCCGCGA ATGCGCCGCA CCACTTCTTA TCGGTAACCA AATTTGGCCA TTCGGCGATT
GTGTCGACCA AAGGTAATCC TGATTGCCAT ATCATTCTGC GTGGTGGCCG TGAGCCTAAT
TACAGTGCCA GCCATGTTGC GCAGATCAGC GAACAACTGA AAAAGGCCAA GCTTGTCGAT
AACATTATGA TCGACTTTAG CCATGCCAAT AGCAGCAAAC AATATCAACG CCAGATGGAT
GTCGCGAACG ATGTGGCCGA GCAAGTGGCC GCGGGTAATA AGGCAATTTT CGGTGTGATG
GTTGAAAGCC ACTTAGTGGA AGGTCGCCAA GATCTGATTG AAGGCCAGGC GTTATGTTAT
GGCCAGAGTA TTACGGATGC CTGTATTGGC TGGGATGATA CCGAGCGTCT GTTAGATGTG
TTAAATCAGA GCGTTATTGC ACGCCGCCAG CGGGTCTAA
|
|---|
| Protein sequence | MYYQNDDVRI NEVKELLPPI AILERFPASE NAAATVFNAR QSIHNILARQ DDRLLVVIGP
CSIHDPKAAL EYGQRLVALR ERYQDQLEVV MRVYFEKPRT TVGWKGLIND PYMDNSFKLN
DGLRTARKLL VDLNDSGMPT AGEFLDMITP QYVADMMCWG AIGARTTESQ VHRELASGLS
CPVGFKNGTD GTIKVAIDAI GAANAPHHFL SVTKFGHSAI VSTKGNPDCH IILRGGREPN
YSASHVAQIS EQLKKAKLVD NIMIDFSHAN SSKQYQRQMD VANDVAEQVA AGNKAIFGVM
VESHLVEGRQ DLIEGQALCY GQSITDACIG WDDTERLLDV LNQSVIARRQ RV
|
|---|
| |