| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3272 |
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| Symbol | |
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| ID | 4253840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3904449 |
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| End bp | 3905531 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119912 |
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| Product | DegS serine peptidase |
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| Protein accession | YP_735397 |
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| Protein GI | 113971604 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.581371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00106456 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAATAA AAGAAACCCT GTTATATCTC GGTAAAGCCG TGCTCTTCGG CCTTATCATG
GCGGCCATGT TTTTGTTAGT TACACACTAC TTCGACAATA AAAATCTCGG CAGCTCGTTA
CTGCAAAACC GGGGTAATAA CACGGTCGAA CTCTCCTTTG CTAAGGCCGT ACGCCGCGCC
GCCCCTGCCG TAGTCAATAT TTATAGCTTA AGTATCGATC AGAGCCGTCC GCTAAACTCT
GGCTCCCTCC AAGGCCTAGG CTCTGGGGTG ATCATGAGTA AAGAAGGCTA TATTCTCACG
AATTATCATG TGATTAAAAA AGCCGATGAA ATTGTGGTGG CACTCCAAGA TGGCCGCAAA
TTCACCTCGG AAGTCGTAGG GTTTGATCCC GAAACCGATC TTTCTGTGCT TAAGATCGAA
GGCGATAATC TTCCAACAGT GCCAGTCAAT CTCGACAGCC CACCGCAGGT TGGGGATGTG
GTATTAGCGA TTGGTAACCC CTATAACCTC GGCCAAACCA TTACCCAAGG CATTATCAGC
GCCACGGGTC GTAACGGCTT AAGTTCTGGT TATTTAGACT TCTTACAGAC AGATGCCGCA
ATTAACGCCG GTAACTCAGG CGGCGCCTTA ATCGACACTA ATGGTAGCCT GATTGGTATC
AACACCGCCG CCTTCCAAGT GGGCGGCGAA GGTGGCGGCC ACGGGATTAA CTTCGCGATC
CCGATTAAAC TGGCCCACAG CATTATGGGT AAACTGATTA AAAATGGTCG AGTGATCCGT
GGTGCCTTAG GGATCTCTGG CGAACCGATT AACCCTGTCA TTGCACAAAT CCTCAATCTG
CCCGATTTAA AAGGTGTGGT CATTATGAGT GTAGATCCCA ATGGCCCCGC GGCACGGGCG
CAGCTACAAC CAAGGGATGT GATCATCAAA TACGATGGCG AAGATGTGCC AGGGGTCGAA
ATGCTGATGG ATAGAATTGC CGAAACCACG CCCGGCAAGA AAATCATGAT GACGGTTATT
CGCCAAGGCA AAGAGCAAGT ATTGCCGGTG ATTATCGATG AGAAGGTCGT CGTCGATAAT
TAA
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| Protein sequence | MTIKETLLYL GKAVLFGLIM AAMFLLVTHY FDNKNLGSSL LQNRGNNTVE LSFAKAVRRA
APAVVNIYSL SIDQSRPLNS GSLQGLGSGV IMSKEGYILT NYHVIKKADE IVVALQDGRK
FTSEVVGFDP ETDLSVLKIE GDNLPTVPVN LDSPPQVGDV VLAIGNPYNL GQTITQGIIS
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTNGSLIGI NTAAFQVGGE GGGHGINFAI
PIKLAHSIMG KLIKNGRVIR GALGISGEPI NPVIAQILNL PDLKGVVIMS VDPNGPAARA
QLQPRDVIIK YDGEDVPGVE MLMDRIAETT PGKKIMMTVI RQGKEQVLPV IIDEKVVVDN
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