| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3270 |
|---|
| Symbol | |
|---|
| ID | 4253838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3901406 |
|---|
| End bp | 3902566 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119910 |
|---|
| Product | AFG1 family ATPase |
|---|
| Protein accession | YP_735395 |
|---|
| Protein GI | 113971602 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1485] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000167889 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000173764 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTAATAT CGACGCAGTT TTTCCAAAGG ATAAAAGAGA ATTATAACGT GCCCCAGTTA
AGCCCTTGGC AGCATTACCA AAAAGATCTT ACTCGTGATG GTTTTTCCCA TGATCCCGCG
CAGGAAATGG CCGTAAAGGC GCTGCAACGC GTCTACGAGG ATTTAACCGC TGCCGAAGCG
CCAAGCTCAT TATTAGGCAA GTTGTTGACC TCCTTTGGCC TTAAGTCTGC GCCTGTCGCG
CCTAAGGGAT TGTATCTGTG GGGCGGTGTC GGTCGCGGCA AAACCTATTT GATGGACACT
TTTTTTGATG CGCTGCCAGG TAATCAAAAA CTAAGGGCGC ACTTTCACCG CTTTATGCAT
CAACTGCATT TGGACCTGGA TGAGCTCAAA GGTACGCGCG ATCCCTTGTT AGTGATTGCC
AAACAAATGG CGGCTAAATA TAGAGTCATT TGTTTTGATG AGTTTTTTGT CTCTGATATC
ACCGACGCCA TGTTGCTTGG CACCTTATTC CAAGCCCTCT TTAAAGAAGG TGTGGTATTA
GTCGCCACTT CAAATATTAT TCCCGATGAT TTGTATAAAA ACGGATTGCA ACGGGCGCGA
TTCCTTCCCG CGATCGCCTT GATCAATCAG CATTGTGAAG TGCTCAATGT GGATTCGGGT
ATCGACTATC GTCTACGCAC ACTGGAGCAG GCCGAGATTT ATCACCATCC ACTCGATGAA
CAGGCCGATA CTAACTTGCT GCGTTATTTC CGTCAGTTAG CCCCCGAGGC CGAAGTGTCA
ACCGACGCGA TAGAGATTGA AGGGCGAGCA ATCAGCATAC GTCAACAGGC GCAAGGCGTG
TTGCTCGCGG ATTTCAGGGC CTTATGCGAT GGTCCCCGTA GTCAGCGGGA TTATATGGAG
CTGGCGCGGA TTTATCATAC CGTGTTGGTG AGTGGCATCG AACAAATGGG CGCGTTTTTA
ACGGGTGATG ATATCGCCAG ACGTTTCTTA GCCATGGTGG ATGAGTTTTA CGAGCGCAAC
GTTAAGTTGA TCGTTTCCGC GCAGGTGCCG CTGGAAGAGA TTTACGCCGA TGGCTTATTG
AGTTTTGAAT TTAGACGCTG CCGCTCTCGC TTAATCGAAA TGCAATCCCA CGATTACTTA
AAATCAGAGC ATTTACCTTA G
|
|---|
| Protein sequence | MVISTQFFQR IKENYNVPQL SPWQHYQKDL TRDGFSHDPA QEMAVKALQR VYEDLTAAEA
PSSLLGKLLT SFGLKSAPVA PKGLYLWGGV GRGKTYLMDT FFDALPGNQK LRAHFHRFMH
QLHLDLDELK GTRDPLLVIA KQMAAKYRVI CFDEFFVSDI TDAMLLGTLF QALFKEGVVL
VATSNIIPDD LYKNGLQRAR FLPAIALINQ HCEVLNVDSG IDYRLRTLEQ AEIYHHPLDE
QADTNLLRYF RQLAPEAEVS TDAIEIEGRA ISIRQQAQGV LLADFRALCD GPRSQRDYME
LARIYHTVLV SGIEQMGAFL TGDDIARRFL AMVDEFYERN VKLIVSAQVP LEEIYADGLL
SFEFRRCRSR LIEMQSHDYL KSEHLP
|
|---|
| |