| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3264 |
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| Symbol | |
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| ID | 4253832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3895380 |
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| End bp | 3897806 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119904 |
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| Product | RNAse R |
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| Protein accession | YP_735389 |
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| Protein GI | 113971596 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000483036 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000524837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT CGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGT
CGTGAGTATA TTATCGAGTA CTTACGTTCT CAAAAATCAC CTATTACCCG TGACAGCATC
GCTGCCGCAC TACAGATCCA CGATGAAGAA CAGTTAGAAG CCCTGCGTCG CCGTTTACGG
GCGATGGAGC GTGACGGTGA ACTGGTATTT ACCCGCGGTC AAAGCTATGG CTTACCTGAA
AAAATGGATC TGATTTCTGG CACAGTCCTT GGGCACAGAG AAGGCTTCGG CTTCTTTAAG
CCTGACGAAG GTGGCGACGA TTTATTTATC TCCAATCGCG ATATGCTGAT GTATTTTCAT
GGTGATAAAG TGCTGGCACA AAAAGCTGGT ATGGATCGCA AAGGCCGCCG CGAGGCCCGT
ATTGTGCGTT TGATCCAACC GCGTAGTGCC GCCATTGTCG GACGATTCCA TGTCGATAGC
GGCATGGCAT TTGTGATTGC CGATGATAAG CGCATTACCC AAGAGATTTT AATCGCTAGT
GAAGATCGCA ATGGTGCCCG TCAAGGCGAT GTGGTCGTGG TGGAGTTAAC CCGTCGTCCG
GGCCGATTCG TTAAAGCCGC GGGTAAAGTG ACTGAAGTGC TCGGCAAGCA AATGGCGCCA
GGGATGGAAA TCGAGATTGC GCTGCGTAAT TACGATCTTC CCCATACTTG GTCGGCAGCA
ATTGAAAAGA AACTACGCCG TATTCCCGAT GAAGTGACCG AAGCGGATAA GGTCGGCCGT
GTCGATTTGC GCAATCTTCC ACTAGTGACA ATTGATGGTG AAGACGCACG CGACTTTGAC
GATGCGGTAT ATGCAGAAGC TAAACCCAGT GGCGGTTGGC GTCTGTGGGT GGCAATTGCG
GATGTGAGCT ACTATGTGCG TACCGATTCG GCCTTAGATA CCGAAGCCCG TGCCCGTGGT
AACTCGGTGT ACTTCCCGTC GCAAGTGATC CCTATGCTGC CGGAGAAGAT CTCTAACGGC
CTGTGCTCGC TCAATCCCGA TGTCGACCGC TTGTGTATGG TCGCGGAGAT GACGATTTCG
GCTCGCGGTA AGTTATCTGG ATATAAGTTT TATCCAGCGG TGATGCATTC ACATGCGCGC
TTCACTTACA CCCAAGTGGC TGCCATGCTC GAAGGTGGAC CGATTGCGCC TGAACATGAA
GCGCTATTCC CGCATCTACA ATGTTTACAG TCGCTCTATT TAGCGCTCGA TGAACAGCGC
GCTGAGCGTG GTGCGATTGC CTTTGAGACG TTAGAAACGC AGTTTATTTT TAACGACCAG
CGCAAGATCG ATAAAATTGT GCCAAGAGCG CGTAATCAAG CTCATAAAAT TATTGAAGAA
TGTATGATTT TGGCCAACGT ATCGGCCGCT AAGTTTGTGA AAAAGCATAA GGGCGAAATC
CTCTATCGTG TGCATGAGTC ACCCTCTGAA CAAAAGTTGG CGAACTTTAA AGAGTTTCTG
GCCGAGCGCG GTTTAAGCAT GGGTGGCGGA CTCGAGCCAA CGCCAGCGGA TTACCAGAAT
GTGATGCTGC AAATCGCCGA TAGGCCAGAT GCCGAGCTTA TCCAAGTGAT GTTGCTGCGC
TCAATGCGCC AAGCAATCTA CACGCCCGAT AACGAAGGCC ATTTTGGTTT GGCACTGGAA
GAATATGCCC ATTTTACCTC GCCTATTCGT CGTTATCCCG ACTTAGTGTT GCATCGCGTG
ATCCGCTATC TACTGGCGAA GGAGAAAGGC GAAGCCAATG AGAAGTGGAC TCCCGATGGG
GGCTACCATT ATCAGCTGGA TGAATTAGAT CAATTAGGCG AAGAATGTTC TACAACGGAG
CGCCGTGCCG ATGAGGCAAC GCGTGATGTA AGTGACTGGC TGAAATGTGA ATTTATGCAG
GACCATGTGG GTGATACCTT TGAGGCGGTT ATTGCCTCTG TCACTAACTT TGGTTTATTC
GTTCGCTTAA ATGACTTATT TATTGATGGT TTAGTGCATA TTTCTAGCCT GGGCAGTGAT
TATTATCAAT TTGACCCTAT GCGTCAGCGT TTGATTGGTG AGCACACAGG GCAAGTCTAT
CAGGTGGGAG ATCCTGTCAC GGTGAAAGTG GCCGCGGTAA ACTTGGACGA TAGACAAATA
GACTTAATGA TGCTTGGTGA CAGTGGTAAA GGTGGACGCC GCAAGGCGGC ACCGAGTCGA
GATAAGCCCA TGACGGCGCG TGAACGGGTC AACCGTGAAG GCGCTAAAAT GGCGAAGGCG
GCGAAATCGA CAGGTACTAA AGCGAAAGCT GGCTCAGATA AAGCGGGTAG CAAATCTAAG
TCTAAAGCTG GCACTAAGCC TAAGAAAAGC GTAAAAGATT CGGCGAAGAA GCCAAAGGCC
GCAAAGCGGA GCACGAGAAA GAAGTAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALQIHDEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLISGTVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG MDRKGRREAR IVRLIQPRSA AIVGRFHVDS GMAFVIADDK RITQEILIAS
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAA
IEKKLRRIPD EVTEADKVGR VDLRNLPLVT IDGEDARDFD DAVYAEAKPS GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPDVDR LCMVAEMTIS
ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET LETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI
LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTPDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF
VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLMMLGDSGK GGRRKAAPSR DKPMTARERV NREGAKMAKA AKSTGTKAKA GSDKAGSKSK
SKAGTKPKKS VKDSAKKPKA AKRSTRKK
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