| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3236 |
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| Symbol | tolC |
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| ID | 4253804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3867445 |
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| End bp | 3868752 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119876 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_735361 |
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| Protein GI | 113971568 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000456355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000511139 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG
GTTCAAGCAG ATGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTAGTA
TTACAAGCAC AAGCTCAACG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA
CTGTTACCGA CAATCAGCGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAGC
GATACCAGTG GATTAACCGG TAGCCTAAAG CTGAACCAAG TGATCTATGA TCACAGCGCT
TGGGTTGGTT TAAGTCTGGC CGAAAAAGCC GCTTCTCAAG CCGATTCAAA CTACGCTTCT
GCCCTGCAAA ATTTAATCAC TCGTGTGACT AAAGCCTACT TTGATGTGTT AACGGCGAAA
GATAACTACG AGTTCCAAGG CGCAGAGAAA CGTGCGATTG AACGTCAACT CGAGCAGACT
AAACAACGTT TTGCCGTAGG TTTAACTGCG ATTACCGACG TACATGAAGC GCAAGCTCAG
TATGACTTAG CCTCGGCTAC TGAAATTTTG GCTGAAAACA CGTTAGCCAA CAGCTACGAA
GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ACGTGCTCGA CACCAACCGT
TTCTCCGCGG TAACACCAGC ACCGACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC
AACAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCCCAAGA GACCATCAGC
CTATACAAAG CGGGCCACAT GCCATCTCTT AGCTTAAACG CTGGCTATAA CAAAGGGTTA
GAGCAAAAAA CTGGCGACGT GAATGAGCCT GATTTTGACA ATGTGAACGT TGGTGTGAAC
TTAAGCATTC CTATTTTTGA AGGCTTTAAA GTCACCTCAC AGGTCAAAGA AGCGCAATTC
CAATACGTGG AAGCGAGCGA GAAGTTAGAG CAAACCTACC GCAGTGTGGT GAAAAACGTT
CGTAACAACT ACAACAACGT AGGCGCTTCT ATTAGCTCAA TCCGTGCTTA TGAGCAGTCA
GTGATTTCAT CTGAAAGTGC GTTAAAGGCA ACACAAGCGG GCTTTGAAGT CGGTACTCGT
ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG
GATGCACGCT ATAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC TGGCACCTTA
AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
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| Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP
LLPTISANVG YDKAWNDPKS DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS
ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN
LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL
NEDDVISINN GLKAE
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