Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3231 |
Symbol | |
ID | 4253799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3862745 |
End bp | 3864631 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638119871 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_735356 |
Protein GI | 113971563 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.821467 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000484218 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGAATC AATACACCTC TGACGCCATT GAAGTTCTTA ACGGACTCGA CCCAGTTAAA CGCCGTCCAG GTATGTATAC CGATACCACC CGACCTAACC ACTTAGGCCA AGAGGTCATA GATAACAGTG TGGATGAGGC TTTAGCGGGC CACGCCACTA AAATCGAAGT TGTGCTCCAT ACCGATAACT CTCTGGAAGT CACCGATGAT GGTCGGGGGA TGCCGGTAGA TATTCACCCT GAAGAAGGCA TTCCTGGGGT CGAGCTGATC CTCACTAAAC TGCATGCGGG CGGTAAATTT TCGAATAAGA ATTATCAATT CTCTGGCGGT CTGCACGGTG TGGGGATTTC GGTCGTTAAC GCCCTGTCTC GTCGCGTCGA AGTGACGGTA CGCCGTGATG GCCAAGTGTA TGATATCGCT TTTGAAAATG GCTTTAAGGT TGAAGAGTTA AAAGTCACTG GTACTTGTGG TCGTCGTAAT ACTGGTACTC GAGTACATTT CTGGCCCGAC GCCAGTTATT TTGATTCGGC GAATTTCTCC AACTCCAAAC TCATCTATTT GCTGCGCGCC AAGGCTGTTT TGTGCCCGGG CCTGAGGATC AAATTTACCA ATAAACACAC CAACGAAGTC CATGAATGGT ACTACGAGAG TGGTTTAACG GATTATCTCA AGGCGGCGGT TGGCGATAAC CTCATGCTGC CAGAAGAGCC TTTTATCGGC AGCTTTAAAG GACAAATTGA AGCCGCGGAT TGGGCCATTA CTTGGTTGCC CGAAGGTGGC GATGCGATTA ACGAAAGCTA TGTTAACTTG ATCCCAACGC CATTGGGTGG AACCCACGTG AATGGTTTCC GCCAAGGTTT GCTGGAGTCG ATGCGCGAGT TTTGCGAGTT TCGCAATCTG ATCCCCCGCG GCATCAAGCT GTCGCCTGAG GATATTTGGG ATCGTGCCGC CTTCATTCTC TCGGTGAAGA TGCAAGATCC GCAGTTTGCA GGGCAAACTA AAGAGAAACT TTCGAGCCGT CAAAGCTCGG CCTTTGTCTC TGGCATTGTG CGCGATGCAT TCTCACTGTG GCTCAACTCG AATACCGAAT TGGCCGAATC ATTGGCTGAG ATGTGTATCA ACAATGCTCA AAAGCGCTTA AAAGCCGCTA AAAAAGTGGC CCGTAAAAAA GTGACTTCTG GCCCAGCATT ACCGGGTAAA TTGACCGACT GTAGCGGCCA AGATCCTATG CGCGGTGAGC TCTTCTTAGT GGAAGGGGAT TCTGCGGGCG GCAGTGCCAA GCAGGCGCGT GACCGTGAGT TTCAAGCCAT TATGCCGCTG CGCGGTAAAA TCCTAAACAC TTGGGAGGTG GATGCCTCGC AGGTGTTGGC CTCGCAGGAA GTGCATGATA TCTCGGTGGC GATTGGTTGC GATCCCGACA GCAACGATAT CTCCGAGTTA AGATATGGCA AGATTTGTAT TCTCGCCGAC GCGGACTCCG ACGGGCTACA TATTGCAACT TTACTCTGTG CCCTGTTTCT GAAACATTAC CGTGTGCTGG TCGAACAGGG CCATGTCTAT ATCGCTATGC CACCGTTGTT CCGTATCGAT ATAGGTAAGG ACGTTTACTA CGCCTTAGAT GAGGCTGAAA AAGAAGGTAT TCTCGACCGT ATTAGCGCCG AGAATAAAAA GGGTAAGGTT CAAGTGACAC GCTTTAAAGG TCTGGGTGAA ATGAACCCAC TGCAATTGCG TGAAACGACC ATGGATCCAA ACACTCGCCG TTTAGTGCAG TTAACCATTG ATGATGCAGA AGAAACCAAT TCTCTGATGG ATATGTTGCT CGCTAAGAAG CGTTCGCCCG ATCGTAAAAA CTGGCTCGAA GATAAGGGTG ACATGGCGGT ACTTTAA
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Protein sequence | MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH TDNSLEVTDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN ALSRRVEVTV RRDGQVYDIA FENGFKVEEL KVTGTCGRRN TGTRVHFWPD ASYFDSANFS NSKLIYLLRA KAVLCPGLRI KFTNKHTNEV HEWYYESGLT DYLKAAVGDN LMLPEEPFIG SFKGQIEAAD WAITWLPEGG DAINESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL IPRGIKLSPE DIWDRAAFIL SVKMQDPQFA GQTKEKLSSR QSSAFVSGIV RDAFSLWLNS NTELAESLAE MCINNAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSNDISEL RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEQGHVY IAMPPLFRID IGKDVYYALD EAEKEGILDR ISAENKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDAEETN SLMDMLLAKK RSPDRKNWLE DKGDMAVL
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