Gene Shewmr4_3122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3122 
Symbol 
ID4253693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3734367 
End bp3737561 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content51% 
IMG OID638119764 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_735250 
Protein GI113971457 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0204453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.110597 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCGA TTACTATGTT CAAAGCGAGT GAAGTGCTGG CAGGCCGCTA CGATTCTGCC 
AATCTCGACG AACTGTTCAA AGCCGTCACC GACAACTATA TTGTCGATGA AGAACAATAC
TTGTCAGAGC TAATCAAACT AGTGCCCTCC AGTGATGAAG CCATCGAGCG CGTCACTCGT
CGTGCCCACG AACTAGTCAA CAAAGTTCGT CAATTCGATA AGAAAGGTTT AATGGTAGGC
ATCGACGCCT TCCTGCAGCA ATACAGCTTA GAAACACAGG AAGGGATTAT CCTGATGTGT
TTAGCCGAAG CCCTGCTGCG TATTCCCGAT GCGGCCACCG CCGACGCCTT GATTGAAGAT
AAACTCTCAG GCGCGAAATG GGATGAACAC TTAAGCAAGA GCGATTCGGT TCTGGTTAAC
GCCTCCACTT GGGGCCTGAT GCTCACTGGC AAAATCGTCA AACTCGATAA AAAAATCGAT
GGTACGCCAA GCAACCTGTT AAACCGTTTA GTGAATCGTT TAGGTGAGCC TGTGATCCGC
CAAGCCATGA TGGCGGCGAT GAAGATCATG GGTAAGCAGT TCGTACTTGG CCGCACCATG
AAAGAAGCGC TCAAGAACAG CGAAGACAAG CGTAAATTAG GTTACACCCA CTCCTACGAT
ATGCTGGGTG AAGCTGCGCT GACGCGTAAA GATGCCGAAA AATACTTTAA CGATTATGCC
AATGCGATTA CCGAGTTAGG CGCGCAAAGC TATAACGAAA GCGAATCACC ACGCCCAACC
ATTTCTATCA AGCTGTCGGC GCTGCACCCA CGTTACGAAG TCGCTAACGA AGACCGTGTA
CTGACCGAGC TGTATGACAC AGTTATTCGC TTAATTAAGT TAGCCCGTGG CTTAAATATC
GGTATTTCTA TCGACGCCGA AGAAGTTGAC CGCCTAGAGC TGTCGCTAAA ACTGTTCCAA
AAACTGTTTA ATTCCGACGC CACTAAGGGT TGGGGCTTAC TCGGTATCGT GGTGCAAGCT
TACTCTAAGC GCGCCCTGCC TGTGTTGGTA TGGTTAACCC GCCTAGCGAA AGAACAAGGC
GATGAAATTC CGGTTCGTTT AGTGAAAGGC GCTTATTGGG ATAGCGAGCT GAAATGGGCA
CAACAAGCTG GCGAAGCCGC ATACCCACTC TACACGCGTA AGGCTGGTAC AGACGTGTCT
TACTTAGCCT GTGCGCGTTA TCTGTTGTCC GATGCGACAC GCGGCGCAAT TTACCCACAA
TTTGCCAGCC ACAACGCGCA AACGGTTGCC GCGATTTCCG ATATGGCGGG CGATCGTAAC
CACGAGTTCC AACGTCTACA CGGCATGGGA CAAGAGCTGT ACGACACTAT TCTGTCGGAA
GCGGGTGCGA AAGCGGTACG TATCTATGCT CCTATCGGTG CCCATAAAGA TCTGCTGCCC
TACTTAGTGC GTCGCCTGCT GGAAAACGGT GCGAACACCT CGTTCGTTCA CAAGCTGGTC
GATCCTAAAA CCCCTATCGA GTCTTTAGTG GTTCACCCAC TGAAAACCCT GACAGGCTAC
AAAACCCTGG CTAATAACAA AATCGTTTTA CCTAGCGATA TCTTCGGTAG TGATCGCAAA
AACTCCAAGG GACTCAACAT GAACATCATT TCAGAAGCAG AGCCATTCTT CGCGGCCTTA
GACAAATTTA AATCGACGCA GTGGCAAGCG GGCCCTCTGG TTAATGGTCA AACCTTAACT
GGCGAGCACA AAACCGTTGT TAGCCCATTC GATACCACCC AAACCGTGGG TCAAGTGGCC
TTTGCCGACA AAGCGGCTAT CGAACAAGCT GTCGCCTCTG CCGATGCTGC GTTTGCAACT
TGGACTCGTA CTCCCGTTGA AGTGCGCGCC TCAGCCCTGC AAAAGCTGGC GGATCTGTTA
GAAGAAAACC GCGAAGAACT GATTGCTCTG TGTACCCGTG AGGCTGGCAA GAGCATTCAA
GACGGTATCG ACGAAGTGCG TGAAGCCGTA GACTTCTGCC GCTACTACGC GGTGCAAGCT
AAGAAGCTGA TGTCAAAACC TGAACTGCTC CCAGGCCCAA CGGGTGAGTT AAACGAACTC
TTCCTCCAAG GTCGCGGTGT GTTCGTCTGT ATCAGCCCAT GGAACTTCCC ATTGGCGATC
TTCTTAGGCC AAGTTTCGGC AGCACTGGCG GCGGGTAACA CTGTCGTTGC TAAACCTGCT
GAACAGACTT CAATCATTGG TTACCGCGCA GTGCAGTTAG CACACCAAGC GGGTATTCCA
ACGGACGTGC TGCAATATCT ACCAGGCACA GGCGCTACCG TAGGTAACGC GCTGACGGCT
GATGAGCGCA TCGGCGGCGT ATGTTTTACC GGTTCAACTG GCACAGCCAA ACTCATCAAC
CGCACACTGG CAAACCGTGA AGGCGCAATC ATTCCGTTAA TCGCCGAAAC CGGTGGTCAA
AACGCTATGG TGGTTGACTC TACTTCTCAG CCAGAACAAG TGGTTAACGA TGTAGTATCT
TCATCCTTCA CCAGTGCGGG TCAACGCTGC TCGGCGCTGC GTGTACTCTT CCTACAGGAA
GATATTGCAG ACCGCGTAAT CGATGTACTC CAAGGTGCGA TGGATGAGTT AGTGATTGGC
AACCCAAGTT CAGTGAAAAC CGACGTAGGC CCAGTTATCG ATGCGACCGC GAAGGCTAAC
CTTGACGCCC ATATCGACCA CATCAAGCAA GTTGGTAAGC TGATCAAGCA AATGTCTCTG
CCTGCGGGTA CCGAGAATGG CCACTTTGTG TCACCAACGG CCGTTGAAAT TGACTCAATC
AGAGTGCTTG AAAAAGAACA CTTTGGTCCA ATCCTGCACG TGATCCGTTA CAAGGCATCT
GAACTTGCCC ATGTGATCGA TGAAATCAAC AGCACAGGTT TTGGCTTAAC CTTAGGTATC
CACAGCCGTA ACGAAGGCCA TGCCCTCGAA GTGGCTGACA AGGTTAACGT AGGTAACGTG
TACATCAACC GTAACCAAAT CGGTGCAGTC GTTGGCGTAC AGCCTTTCGG CGGTCAAGGT
CTGTCGGGCA CTGGTCCAAA AGCCGGTGGT CCACACTACT TAACTCGCTT CGTGACTGAA
AAGACTCGCA CTAATAACAT CACCGCTATC GGTGGTAACG CCACACTGTT ATCACTGGGT
GATAGCGACG CCTAA
 
Protein sequence
MEAITMFKAS EVLAGRYDSA NLDELFKAVT DNYIVDEEQY LSELIKLVPS SDEAIERVTR 
RAHELVNKVR QFDKKGLMVG IDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED
KLSGAKWDEH LSKSDSVLVN ASTWGLMLTG KIVKLDKKID GTPSNLLNRL VNRLGEPVIR
QAMMAAMKIM GKQFVLGRTM KEALKNSEDK RKLGYTHSYD MLGEAALTRK DAEKYFNDYA
NAITELGAQS YNESESPRPT ISIKLSALHP RYEVANEDRV LTELYDTVIR LIKLARGLNI
GISIDAEEVD RLELSLKLFQ KLFNSDATKG WGLLGIVVQA YSKRALPVLV WLTRLAKEQG
DEIPVRLVKG AYWDSELKWA QQAGEAAYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ
FASHNAQTVA AISDMAGDRN HEFQRLHGMG QELYDTILSE AGAKAVRIYA PIGAHKDLLP
YLVRRLLENG ANTSFVHKLV DPKTPIESLV VHPLKTLTGY KTLANNKIVL PSDIFGSDRK
NSKGLNMNII SEAEPFFAAL DKFKSTQWQA GPLVNGQTLT GEHKTVVSPF DTTQTVGQVA
FADKAAIEQA VASADAAFAT WTRTPVEVRA SALQKLADLL EENREELIAL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKLMSKPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI
FLGQVSAALA AGNTVVAKPA EQTSIIGYRA VQLAHQAGIP TDVLQYLPGT GATVGNALTA
DERIGGVCFT GSTGTAKLIN RTLANREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQE DIADRVIDVL QGAMDELVIG NPSSVKTDVG PVIDATAKAN
LDAHIDHIKQ VGKLIKQMSL PAGTENGHFV SPTAVEIDSI RVLEKEHFGP ILHVIRYKAS
ELAHVIDEIN STGFGLTLGI HSRNEGHALE VADKVNVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSDA