Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3122 |
Symbol | |
ID | 4253693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3734367 |
End bp | 3737561 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638119764 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_735250 |
Protein GI | 113971457 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0204453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.110597 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCGA TTACTATGTT CAAAGCGAGT GAAGTGCTGG CAGGCCGCTA CGATTCTGCC AATCTCGACG AACTGTTCAA AGCCGTCACC GACAACTATA TTGTCGATGA AGAACAATAC TTGTCAGAGC TAATCAAACT AGTGCCCTCC AGTGATGAAG CCATCGAGCG CGTCACTCGT CGTGCCCACG AACTAGTCAA CAAAGTTCGT CAATTCGATA AGAAAGGTTT AATGGTAGGC ATCGACGCCT TCCTGCAGCA ATACAGCTTA GAAACACAGG AAGGGATTAT CCTGATGTGT TTAGCCGAAG CCCTGCTGCG TATTCCCGAT GCGGCCACCG CCGACGCCTT GATTGAAGAT AAACTCTCAG GCGCGAAATG GGATGAACAC TTAAGCAAGA GCGATTCGGT TCTGGTTAAC GCCTCCACTT GGGGCCTGAT GCTCACTGGC AAAATCGTCA AACTCGATAA AAAAATCGAT GGTACGCCAA GCAACCTGTT AAACCGTTTA GTGAATCGTT TAGGTGAGCC TGTGATCCGC CAAGCCATGA TGGCGGCGAT GAAGATCATG GGTAAGCAGT TCGTACTTGG CCGCACCATG AAAGAAGCGC TCAAGAACAG CGAAGACAAG CGTAAATTAG GTTACACCCA CTCCTACGAT ATGCTGGGTG AAGCTGCGCT GACGCGTAAA GATGCCGAAA AATACTTTAA CGATTATGCC AATGCGATTA CCGAGTTAGG CGCGCAAAGC TATAACGAAA GCGAATCACC ACGCCCAACC ATTTCTATCA AGCTGTCGGC GCTGCACCCA CGTTACGAAG TCGCTAACGA AGACCGTGTA CTGACCGAGC TGTATGACAC AGTTATTCGC TTAATTAAGT TAGCCCGTGG CTTAAATATC GGTATTTCTA TCGACGCCGA AGAAGTTGAC CGCCTAGAGC TGTCGCTAAA ACTGTTCCAA AAACTGTTTA ATTCCGACGC CACTAAGGGT TGGGGCTTAC TCGGTATCGT GGTGCAAGCT TACTCTAAGC GCGCCCTGCC TGTGTTGGTA TGGTTAACCC GCCTAGCGAA AGAACAAGGC GATGAAATTC CGGTTCGTTT AGTGAAAGGC GCTTATTGGG ATAGCGAGCT GAAATGGGCA CAACAAGCTG GCGAAGCCGC ATACCCACTC TACACGCGTA AGGCTGGTAC AGACGTGTCT TACTTAGCCT GTGCGCGTTA TCTGTTGTCC GATGCGACAC GCGGCGCAAT TTACCCACAA TTTGCCAGCC ACAACGCGCA AACGGTTGCC GCGATTTCCG ATATGGCGGG CGATCGTAAC CACGAGTTCC AACGTCTACA CGGCATGGGA CAAGAGCTGT ACGACACTAT TCTGTCGGAA GCGGGTGCGA AAGCGGTACG TATCTATGCT CCTATCGGTG CCCATAAAGA TCTGCTGCCC TACTTAGTGC GTCGCCTGCT GGAAAACGGT GCGAACACCT CGTTCGTTCA CAAGCTGGTC GATCCTAAAA CCCCTATCGA GTCTTTAGTG GTTCACCCAC TGAAAACCCT GACAGGCTAC AAAACCCTGG CTAATAACAA AATCGTTTTA CCTAGCGATA TCTTCGGTAG TGATCGCAAA AACTCCAAGG GACTCAACAT GAACATCATT TCAGAAGCAG AGCCATTCTT CGCGGCCTTA GACAAATTTA AATCGACGCA GTGGCAAGCG GGCCCTCTGG TTAATGGTCA AACCTTAACT GGCGAGCACA AAACCGTTGT TAGCCCATTC GATACCACCC AAACCGTGGG TCAAGTGGCC TTTGCCGACA AAGCGGCTAT CGAACAAGCT GTCGCCTCTG CCGATGCTGC GTTTGCAACT TGGACTCGTA CTCCCGTTGA AGTGCGCGCC TCAGCCCTGC AAAAGCTGGC GGATCTGTTA GAAGAAAACC GCGAAGAACT GATTGCTCTG TGTACCCGTG AGGCTGGCAA GAGCATTCAA GACGGTATCG ACGAAGTGCG TGAAGCCGTA GACTTCTGCC GCTACTACGC GGTGCAAGCT AAGAAGCTGA TGTCAAAACC TGAACTGCTC CCAGGCCCAA CGGGTGAGTT AAACGAACTC TTCCTCCAAG GTCGCGGTGT GTTCGTCTGT ATCAGCCCAT GGAACTTCCC ATTGGCGATC TTCTTAGGCC AAGTTTCGGC AGCACTGGCG GCGGGTAACA CTGTCGTTGC TAAACCTGCT GAACAGACTT CAATCATTGG TTACCGCGCA GTGCAGTTAG CACACCAAGC GGGTATTCCA ACGGACGTGC TGCAATATCT ACCAGGCACA GGCGCTACCG TAGGTAACGC GCTGACGGCT GATGAGCGCA TCGGCGGCGT ATGTTTTACC GGTTCAACTG GCACAGCCAA ACTCATCAAC CGCACACTGG CAAACCGTGA AGGCGCAATC ATTCCGTTAA TCGCCGAAAC CGGTGGTCAA AACGCTATGG TGGTTGACTC TACTTCTCAG CCAGAACAAG TGGTTAACGA TGTAGTATCT TCATCCTTCA CCAGTGCGGG TCAACGCTGC TCGGCGCTGC GTGTACTCTT CCTACAGGAA GATATTGCAG ACCGCGTAAT CGATGTACTC CAAGGTGCGA TGGATGAGTT AGTGATTGGC AACCCAAGTT CAGTGAAAAC CGACGTAGGC CCAGTTATCG ATGCGACCGC GAAGGCTAAC CTTGACGCCC ATATCGACCA CATCAAGCAA GTTGGTAAGC TGATCAAGCA AATGTCTCTG CCTGCGGGTA CCGAGAATGG CCACTTTGTG TCACCAACGG CCGTTGAAAT TGACTCAATC AGAGTGCTTG AAAAAGAACA CTTTGGTCCA ATCCTGCACG TGATCCGTTA CAAGGCATCT GAACTTGCCC ATGTGATCGA TGAAATCAAC AGCACAGGTT TTGGCTTAAC CTTAGGTATC CACAGCCGTA ACGAAGGCCA TGCCCTCGAA GTGGCTGACA AGGTTAACGT AGGTAACGTG TACATCAACC GTAACCAAAT CGGTGCAGTC GTTGGCGTAC AGCCTTTCGG CGGTCAAGGT CTGTCGGGCA CTGGTCCAAA AGCCGGTGGT CCACACTACT TAACTCGCTT CGTGACTGAA AAGACTCGCA CTAATAACAT CACCGCTATC GGTGGTAACG CCACACTGTT ATCACTGGGT GATAGCGACG CCTAA
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Protein sequence | MEAITMFKAS EVLAGRYDSA NLDELFKAVT DNYIVDEEQY LSELIKLVPS SDEAIERVTR RAHELVNKVR QFDKKGLMVG IDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED KLSGAKWDEH LSKSDSVLVN ASTWGLMLTG KIVKLDKKID GTPSNLLNRL VNRLGEPVIR QAMMAAMKIM GKQFVLGRTM KEALKNSEDK RKLGYTHSYD MLGEAALTRK DAEKYFNDYA NAITELGAQS YNESESPRPT ISIKLSALHP RYEVANEDRV LTELYDTVIR LIKLARGLNI GISIDAEEVD RLELSLKLFQ KLFNSDATKG WGLLGIVVQA YSKRALPVLV WLTRLAKEQG DEIPVRLVKG AYWDSELKWA QQAGEAAYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ FASHNAQTVA AISDMAGDRN HEFQRLHGMG QELYDTILSE AGAKAVRIYA PIGAHKDLLP YLVRRLLENG ANTSFVHKLV DPKTPIESLV VHPLKTLTGY KTLANNKIVL PSDIFGSDRK NSKGLNMNII SEAEPFFAAL DKFKSTQWQA GPLVNGQTLT GEHKTVVSPF DTTQTVGQVA FADKAAIEQA VASADAAFAT WTRTPVEVRA SALQKLADLL EENREELIAL CTREAGKSIQ DGIDEVREAV DFCRYYAVQA KKLMSKPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI FLGQVSAALA AGNTVVAKPA EQTSIIGYRA VQLAHQAGIP TDVLQYLPGT GATVGNALTA DERIGGVCFT GSTGTAKLIN RTLANREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS SSFTSAGQRC SALRVLFLQE DIADRVIDVL QGAMDELVIG NPSSVKTDVG PVIDATAKAN LDAHIDHIKQ VGKLIKQMSL PAGTENGHFV SPTAVEIDSI RVLEKEHFGP ILHVIRYKAS ELAHVIDEIN STGFGLTLGI HSRNEGHALE VADKVNVGNV YINRNQIGAV VGVQPFGGQG LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSDA
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