| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3106 |
|---|
| Symbol | |
|---|
| ID | 4253677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3716265 |
|---|
| End bp | 3717242 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638119748 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_735234 |
|---|
| Protein GI | 113971441 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT CATCCCAAGG CCAACTTAAA CTTCGGCACT TAAGCTTTCG TTTGCTTGAG
GTCTATGTGC AGGTCGTCAG GCTTGGCAAT ATCTCAGCCG CCGCGCGCGC CTTGCATCTC
ACTCAGCCGA CGGTCTCGCT ACAACTGAAG AAATTGGCGG ATATTTTGGG TGAGCCTCTG
TTAGTAAGCG CAGAGGGGCG AATGCAGCCG ACCTTAGTTG GGCAAGAGCT CTATCGGGTT
GCCTGCGATA CCTTGAGTCG TTTCGAAGAC TTCGATGCCT TTATCCAGCA GGCGAGGGGC
GGCAGTGTGG GCCATATCAA TATTGGTCTA GTGACCACGG CAAAATACGT GATGCCTCGG
ATTTTAGGGG CCTTCTATCG GCAATTTCCG CAGGTGAAAG TCACTCTGAA TATTGGCAAC
CGTGCGCATA TTTTGGGGCG ATTCGAACGT CAAGAAGATG ATTTATATCT CTTTAGTCAT
CCCCCAAGTG GTGAGCATGT ATTATCTGCG CGGATCATTA AAAATCCGCT GCAACTGATA
GCCCCTAAGG ACCATTGGGC AGTTGAGCGC CAACATCTCA ACTTTAGCGA GTTGAAACAA
GAGCGCTTTA TCATGCGCGA GCCAGGCTCT GCCACACGGC TGATGTTTGA GTCTTGGTGT
AGCGCCCAAG GCATTGCCTT GAGCGACACT ATGCAAATTG AGAGCAACGA GGCCATCCGT
TTAAGCGTGG CATCGGGCTT AGGCTTATCG GTGATTTCGG CCCACACTCT GCAAGAAGGC
CGTGAAAAAC CCGCAATATT GTCGGTGAAC GGATTTCCAC TGGAGAGTAA CTGGTATCTG
GTGGGGCGCA AGGATAGGCG CTTACCCTAT GCTGCCATGC AGTTGGTGTC GTTTATGGCG
AGTCAGCTCG CCGAGTGTAT TGAACCTGAG TGGGTTGCCG TGGATATTCA GCAGTTAAGC
CAACGGTTTA ATGGATGA
|
|---|
| Protein sequence | MDKSSQGQLK LRHLSFRLLE VYVQVVRLGN ISAAARALHL TQPTVSLQLK KLADILGEPL
LVSAEGRMQP TLVGQELYRV ACDTLSRFED FDAFIQQARG GSVGHINIGL VTTAKYVMPR
ILGAFYRQFP QVKVTLNIGN RAHILGRFER QEDDLYLFSH PPSGEHVLSA RIIKNPLQLI
APKDHWAVER QHLNFSELKQ ERFIMREPGS ATRLMFESWC SAQGIALSDT MQIESNEAIR
LSVASGLGLS VISAHTLQEG REKPAILSVN GFPLESNWYL VGRKDRRLPY AAMQLVSFMA
SQLAECIEPE WVAVDIQQLS QRFNG
|
|---|
| |