Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3047 |
Symbol | |
ID | 4253618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3646863 |
End bp | 3648338 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638119689 |
Product | carbon starvation protein CstA |
Protein accession | YP_735175 |
Protein GI | 113971382 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000178589 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0660711 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTATTT TCTTCTTATG CCTTGCGCTC TTAGTGCTGG CATACAAGTT TTATAGCCCA TTTGTTGAGC GCCAAGCAGG GATTGATCCT AAAGCGCAAA CACCCCAAGC AAGATTCGAA GACGGCGTGG ACTATGTGCC CGTTCACCCC GCCAAAGCGT TTTTGATCCA ATTCTTAAAC GTTGCCGGTG TAGGCCCGAT TTTTGGTCCT ATCCTAGGTG CTTTATATGG TCCAGTGGCG TTACTCTGGA TTGTGTTAGG TAACATTATT GGCGGCGCGG TACACGACTA TTTCTCGGGT GTGTTAAGCA TTAAAGAAGA CGGTAAGAGC CTGCCAGAAA TCGCTGGTCA CTACTTTAAT GTCTACTTTA AAGGCGTGAT GCTGCTGTTT ACTGCGATGT TACTGTTCTT CGTGGGCGTG GTGTTTATCA TGAGCCCAGC GGGTCTGTTA AGTAACCTCG ACTATTTTAA AGATACCATT TTTGGCAATA ACACCTTCTG GGTGTTAGTG ATTTTGGCTT ATTACTTCTT AGCCACTATG CTGCCAATCG ATAAGATCAT CACTAAGCTT TACCCTGCTT TTGGTCTGTT GATGATCGTT ATGACCACTT CGATTGCGGT TGCTCTGCTG ATCAGCGCGC CACAGTTACC CGAAATGGGC GATGTGTTTG CTTACTTCAA CCACAGCCAT TACAACAATG ACTTGCTCGA GCCTAACCCC GACGGTTTAC CGATTTGGCC ATTGCTGTTT GTGACTATTA CCTGTGGTGC TATCAGTGGT TTCCACTCGA CTCAAGCACC TATCATGGCG CGCTGCCTGA CCAACGAGAA ATACGTCCGC CCCGTTTACT ATGGCGCTAT GGTGGCTGAA GGTGTTGTGG CTTGTGTGTG GGCAACTGCG GGGATTGCAG CCTTCCCTGG TGGTTATGTT GAGCTTAAGA GCTTACTCGA CCAAGGTGGT CCAGGCCTTG TCGTTAACCA AGTGGCCACG AGCTATCTTG GTGTATTAGG CGGTGTGATG GCGATTATTG CGGTGGCTGT ATTCCCTATT ACTTCGGGTG ATACTGCATT TAGATCGCTG CGCCTCACTA TTATCGACGC CTTTAACATC CCACAGAGTA TGCGTAACCG TTTGCTGGTG GCGGCGCCTA TCCTGACCAT CGCTTACTTT ATGACTAAGA TCGACTTCTC CTTGATCTGG CGTTATTTCG CCTTCTCAAA CATGCTGTTA TCGACAAGCG TGCTGTGGTT GGCGACTAAG TATCTGTTCG ATAGAGGCAG CTTCCATTGG ATTGTGAGTT TGCCTGCGAT TGCCGGAACC TGTGTGACCA TCTCTTACAT CATGACGGCG GGTATTGGTT TAGGTTTGCC TCAATCTCTG AGCCAACCCG TGGGGATTGC GGTCGGCGTG GTGTGTTTAG TGGCTTTGAT TATTGCCCAT AACAAACGCA AAACAGTGCT GAATACAAAC TCTTAA
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Protein sequence | MFIFFLCLAL LVLAYKFYSP FVERQAGIDP KAQTPQARFE DGVDYVPVHP AKAFLIQFLN VAGVGPIFGP ILGALYGPVA LLWIVLGNII GGAVHDYFSG VLSIKEDGKS LPEIAGHYFN VYFKGVMLLF TAMLLFFVGV VFIMSPAGLL SNLDYFKDTI FGNNTFWVLV ILAYYFLATM LPIDKIITKL YPAFGLLMIV MTTSIAVALL ISAPQLPEMG DVFAYFNHSH YNNDLLEPNP DGLPIWPLLF VTITCGAISG FHSTQAPIMA RCLTNEKYVR PVYYGAMVAE GVVACVWATA GIAAFPGGYV ELKSLLDQGG PGLVVNQVAT SYLGVLGGVM AIIAVAVFPI TSGDTAFRSL RLTIIDAFNI PQSMRNRLLV AAPILTIAYF MTKIDFSLIW RYFAFSNMLL STSVLWLATK YLFDRGSFHW IVSLPAIAGT CVTISYIMTA GIGLGLPQSL SQPVGIAVGV VCLVALIIAH NKRKTVLNTN S
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