Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3043 |
Symbol | |
ID | 4253614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3640579 |
End bp | 3642021 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638119685 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_735171 |
Protein GI | 113971378 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.339991 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.187596 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAAACG ATGGTTATAC TTCCCTTAGC CAATTTGTTG ATCTGTTATT AGATGCCATC TGCGTCGTCG ATAAAACCGG ACACTTCGAG TTTGTTAGTG CGGGCGCCGA GCGTATTTTT GGCTATACCC CAGATGAAAT GATTGGTATG CAGATGTTAG ATCTCGTGTA TCCAGAGGAC CGGGAGCGTA CCATTGCCGC AGCTAATGAC ATTATGGCGG ACAGCTTTAA GCTAGATTTT GAAAATCGCT ATGTTCGTAA AGATGGCACC CTAGTCGATA TCCTCTGGTC TGCCCGTTGG TCTGAGGACC GTCAGCAGCG GATTGCCGTG GCCCGGGACA TTACGAAGAG CAAGGCTGCC GAGCGGCGTC AGGCTGCCCT GTATGAGATT TCTGAAGCCG TGCATGTAGC AGAAGATCTC CTCGCCCTGT ATCGACGCAT TCACCAGATC ATGGCCAAGC TGTTGCCGAC AGATAATTTT GCAATCGCGC TGTATGATGC CGATCTTAAT GAGTTAGATT TTCCCTATCG CGTGTTGGCG GGGGAGCAAA ATCCGGCGCA ATCCGCCAGT TTCGATCATT TTACCGAGCA AGTGATCCAA AGCGCAGAGT CTATGCTGCT TTGTCCCATG ACTCGGCCTG TTTCTGCGGT TGAAAGTGAG CTTTGCTATT CGCAAGTCGG TCCGCAAAAA AATCAGCAAG ATAATCAGCA AGATAACCCG CAAGCCATAA GTTGGCTTGG TGTGCCGCTA ACATTGCAGA AGGGCATTAT CGGCGCCTTG ATTATGCATA GCACCCCAGA TTCTCGGGCT TATACTCAGC AGGATCGCGA ACTGGTTGAG TTTGTGTCGA CACAAATCGC CTTCGCTATC GAGCGTCGGC AAATGCTGGC GCGATTGGAG CATATTGCAC TTTATGATCA ACTCACCCAT TTGCCCAATC GCGAATTGTT TTATGACAGA TTCCAGAAGG CGTTATCGCG CGCGAATCGC GAGTCGAGCT ATTTTTCCTT ACTCTACTTG GATTTAGACA AGTTTAAATG GGTGAATGAT ACCTATGGCC ATGGTGTGGG TGATCTCTTA TTGCAAATTA CCGCCCAGCG GATTTTAGGA TGCGTTAGAA GCTCGGATAC GGTTGCACGC TTTGGTGGTG ATGAGTTTGT GGTCCTGCTA GAGCGTGTCG ATTCGGCGCA GAATACCTTA CTCGTCGCCC AAAAAATCTT AGATGTGCTT AACCAACCCT TCGAGTTGGT GAATCAGCAG ATCCATATTT TGCCTAGCAT TGGGATTGCT CTGTATCCCG AGCATGGCAG GGATGAAAAA CAACTGCTGT CCTGCGCCGA TACGGCGATG TATAAGGCGA AGCGCAATGG TGGCAATCGG ATTGAAATGG GTTATCAAGG CTTAAAGACC AGCTATTTCG AGCCTCTGAT CCAGCCCCAT TGA
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Protein sequence | MKNDGYTSLS QFVDLLLDAI CVVDKTGHFE FVSAGAERIF GYTPDEMIGM QMLDLVYPED RERTIAAAND IMADSFKLDF ENRYVRKDGT LVDILWSARW SEDRQQRIAV ARDITKSKAA ERRQAALYEI SEAVHVAEDL LALYRRIHQI MAKLLPTDNF AIALYDADLN ELDFPYRVLA GEQNPAQSAS FDHFTEQVIQ SAESMLLCPM TRPVSAVESE LCYSQVGPQK NQQDNQQDNP QAISWLGVPL TLQKGIIGAL IMHSTPDSRA YTQQDRELVE FVSTQIAFAI ERRQMLARLE HIALYDQLTH LPNRELFYDR FQKALSRANR ESSYFSLLYL DLDKFKWVND TYGHGVGDLL LQITAQRILG CVRSSDTVAR FGGDEFVVLL ERVDSAQNTL LVAQKILDVL NQPFELVNQQ IHILPSIGIA LYPEHGRDEK QLLSCADTAM YKAKRNGGNR IEMGYQGLKT SYFEPLIQPH
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