| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3016 |
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| Symbol | |
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| ID | 4253587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3601968 |
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| End bp | 3603113 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638119658 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_735144 |
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| Protein GI | 113971351 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0151419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTAC TATTGATATT AACCTATGCC TCGATCTGCA TTGTGATTTT TAAAGTCTTT
AAGATCCCGA TGAACAAATG GACAGTGCCC ACGGCGGTAT TAGGGGGCGT GGTTCTTATC
GGGGCGTTGT TGCTGATTAT GAATTACAAC CATCCCTATT CACGTTTCGC GCGGGAATAC
TATGCCACTA TTCCAATCAC TCCAGCGGTA AAAGGGTTAG TGATTTCGGT GGACGTTAAG
CCTAATACGC CGATTAAACA AGGGGATGTG CTGTTTCGAA TCGATCCCAC TCCCTTTGAA
GCCGTGGTTA AACGCAAAAG AGCCGCTCTG TTAGCGGCGG AGCAGGAAGT GCCACAACTT
GAGGCCGCTT GGGAGTCTGC TAAGGCGAAT GTGGCCAGAG TCGCTGCGGA TAGGGAGCGT
AATAAATCGG CTTATGACCG TTATGAACAA GGCCATCGTA AAGGTGGAGC GAACTCTCCC
TTTACTGAGC TGGAATTAGA CAATAGACGC CAACTGTTTT TAGCCTCAGA GGCTCAGCTA
ACGGCTGCGC AGGCCGAAGA GTTACGCGCA CGTCTTGCCT ATGAGTCCAA TGTGGATGGG
GTAAATTCTA AGGTGGCGGG GCTGCAGGGG GATCTTGAAA GCGCGCTCTA TAATCTCGAG
CAAACCGTCG TGCGGGCACC AGCCGATGGT ATTGTGACTC AAATGGCGCT GCGCCCAGGT
GCAATGGCGG TGCCTTTGCC TTTACGGCCG GTGATGAGTT TTATCCCCGA CGAGCAGCGT
TATTTTGCTG GCGCATTCTG GCAAAACTCC CTACTGCGAT TACAGGAAGG GGATGAGGCG
GAAGTGGTAT TAGATGCGGC GCCTGGACAA GTGTTTAAGG GCAAAGTCGC TAAGGTACTC
CCCGCGATGG CCGAAGGCGA GATCCAGATG AATGGCATGC TGCAATCGTC CAATCAGCTA
TTCCAAACAG GTCGGGTTAT CGTGTTAATC GATATTGAAG ACGATGCGAT ACGCCGCCAA
TTCCCAGCGG GCGTTGCGGG ACAAGTGGCT GTGTACACAG AACATTTCCA CCATGTCGCC
GTGATGCGTA AAGTGCTGCT GCGGATGCAG GGCTGGTTAA ACTACTTGTT CTTCGATGGG
CACTAG
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| Protein sequence | MDLLLILTYA SICIVIFKVF KIPMNKWTVP TAVLGGVVLI GALLLIMNYN HPYSRFAREY
YATIPITPAV KGLVISVDVK PNTPIKQGDV LFRIDPTPFE AVVKRKRAAL LAAEQEVPQL
EAAWESAKAN VARVAADRER NKSAYDRYEQ GHRKGGANSP FTELELDNRR QLFLASEAQL
TAAQAEELRA RLAYESNVDG VNSKVAGLQG DLESALYNLE QTVVRAPADG IVTQMALRPG
AMAVPLPLRP VMSFIPDEQR YFAGAFWQNS LLRLQEGDEA EVVLDAAPGQ VFKGKVAKVL
PAMAEGEIQM NGMLQSSNQL FQTGRVIVLI DIEDDAIRRQ FPAGVAGQVA VYTEHFHHVA
VMRKVLLRMQ GWLNYLFFDG H
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