| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2965 |
|---|
| Symbol | |
|---|
| ID | 4253536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3541276 |
|---|
| End bp | 3543642 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638119601 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_735093 |
|---|
| Protein GI | 113971300 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.79462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTA CACATGAGAT TAATGCTCTT AAAAAGTATG TAAGAGCCAC AAACTTCCTC
GCTACGTCTC AGATTTATCT AAAACAAAAC GTATTGCACA AACGCCCCCT TGCGCATTCG
GACATTAAGC CTCGTTTGCT CGGTCACTGG GGAACTTGTC CAGGTATCAA CTTTGTCTAT
GCCAACGTCA ACCGACTCAT TGTAAAACAT AATCGTCCTT TCATTTACTT AGTTGGCCCA
GGCCATGGCT TCCCTGCTGT ACAAGCTAAC TTATTCATTG AAGGCTCACT CAGCCACTTC
TACCCAGAAA CCATTCCTTA TAATGAAACC GGCATCGAAG ATATCTGTAA GAAATTTTCT
GCAGCCTATG GTTATCCTTC CCATGCAAAC CCAGAAGCAC CAGGTCAAAT CCTTGAAGGC
GGCGAATTAG GTTATTCATT ATCAGTTGGC TGGGGCGCAG TATTAGACAA CCCAGATCTT
ATCGCTACAG TATTAGTTGG TGACGGTGAA TCAGAAACTG GTCCTCTGGC AGCATCTTGG
TATGCCAACC GCTTAGTTTC ACCCGCAACC AACGGTGCTG TATTGCCTAT CGTACATATC
AACGGTTATA AGATTTCAGG CCCAACCCGT ATGGGACGCA TGAGCCATGA AGAATTAGAT
CTTGAATTCC GCGGTCTTGG CTACCACCCA ATTATTGTTG ACAGCGAAGC GGAAGAAGAT
ATCTACATTC AGATGGCGAC CGCCATGGAT ACCGCTTATA GCATGATCAA CGATATTCAA
ACTCGAGCAC GTAAGGGTGA AGATATTGTC AAACCTCGCT GGCCAGTGAT TTTAATGCGC
ACCGCCAAGG GCTGGACAGG TGTGAGCGAA TATAACGGTA CGAAATTGGA AGGTAACTGC
GAGTCGCACC AAGTTATCGT CAATAAATGT GCCACTGATA AAGGCCACTT AGCTGCACTG
GATAGCTGGT TAGCCAGTTA TCAATTCCAA GAGCTTTACC AAATCAACGG GCAGGGTGAA
CTGATTTTTG ATGCCGATAT TAGCTCACTG ATCCCGCCAA AACATTTAGC TTGCGGTCGC
CAACATCTCA CTTATGGTGG TGAAGTCGTC AGAGCCTTAT CTAATCCAGA TCTAGAAAAG
CTCAGCTATG GCCCAGAAGT ACCACGTGGA CACCGCGGTT ACTCTATGCT GAAAATGGGG
CAATGGATGC GCGACGCATT CAAATTGAAC CGTGATCAAC GCAACTTACG TATCTTCAGC
CCAGATGAAA CCTATTCAAA CCAGCTGCAA GCAGTATTTG AAGAAACCGA CCGCGCATGG
CAATGGCCAA TTGAAAGCTG GGACGAAGAC ATGTCTCGCG ATGGTCGAGT ACTCGAGTTG
CTCTCAGAGA ACTTACTGTT TGGTATGCTG CATGGCTACA CAGTGACGGG ACGTCACGGA
ATGTTCCCTA CCTATGAGTC TTTCTCACAG GTCGTATCCT CCATGGCTGA CCAATATTGT
AAGTATGTTT ACGCCAGTCA AGGAGTGCAT TTCCGTAAGC CTTTACCGGC GTGCAACGTG
GTACTTTCTT CATTATTAGA ACGTCAAGAT CACAACGGTT ATTCGCACCA GAACCCATCA
TTCCTAGGTG CGATGCTTGA AAAACATCCA AAGATTATTT CTGCTTATTT ACCTGCGGAT
GCTAACAGCA CCTTAGTTTA TACCGAACGC GCTTTTGCAG ATCGTGACAA ATTGAACATC
CTAGTCGCAG GCAAAAAAGA ACTGCCACAA TGGCTCAGTT TAGAAGAAGC GCGTAAACAA
GCTAAAGACG GCGTCATGGT GTGGGATTTT GCTTCCGATG AAAATCCAGA TATCGTGCTT
GCAGGTTGTG GTGATTATGT CACTCAAGAA TGTATGGCCT CTTTAGTGAT TATTCGTGAA
CTATTACCTA GAGTCAGAAT TCGCTTTGTC AGCGTGACAG AATTAAGCAG CGATGGTTTA
GGTAGTCGTA AATTTAAAGA AAAACCATGG ATGATGGATG AAATATTTAC CCAAGATAAA
GGGGTAGTAT TTAACTATCA CGGTTATCCA AATACGATCA AAAAGTTAAT ATTTGATTAC
AAAGGAAGCC GTCGCTTCAG AATTAAAGGT TACGAAGAAG AAGGTTCAAC AACCACTCCA
TTTGATATGG GTGTTCGAAA TGGCACTTCT CGCTATCACC TTGTTATTGA TATGGCTTAC
AAACTATTCC AGCAAGGTGT CATCGACGAA ACCAAGCACG TTTCCATCAC AACCGACATG
CTGCAAAGAC TCGTTGATCA TCGCAACTAT ATTAAGGCAA ATGGTGTTGA CCCTGTTGAA
ATTGAAAATT GGATTTGGAC CCGTTAA
|
|---|
| Protein sequence | MTTTHEINAL KKYVRATNFL ATSQIYLKQN VLHKRPLAHS DIKPRLLGHW GTCPGINFVY
ANVNRLIVKH NRPFIYLVGP GHGFPAVQAN LFIEGSLSHF YPETIPYNET GIEDICKKFS
AAYGYPSHAN PEAPGQILEG GELGYSLSVG WGAVLDNPDL IATVLVGDGE SETGPLAASW
YANRLVSPAT NGAVLPIVHI NGYKISGPTR MGRMSHEELD LEFRGLGYHP IIVDSEAEED
IYIQMATAMD TAYSMINDIQ TRARKGEDIV KPRWPVILMR TAKGWTGVSE YNGTKLEGNC
ESHQVIVNKC ATDKGHLAAL DSWLASYQFQ ELYQINGQGE LIFDADISSL IPPKHLACGR
QHLTYGGEVV RALSNPDLEK LSYGPEVPRG HRGYSMLKMG QWMRDAFKLN RDQRNLRIFS
PDETYSNQLQ AVFEETDRAW QWPIESWDED MSRDGRVLEL LSENLLFGML HGYTVTGRHG
MFPTYESFSQ VVSSMADQYC KYVYASQGVH FRKPLPACNV VLSSLLERQD HNGYSHQNPS
FLGAMLEKHP KIISAYLPAD ANSTLVYTER AFADRDKLNI LVAGKKELPQ WLSLEEARKQ
AKDGVMVWDF ASDENPDIVL AGCGDYVTQE CMASLVIIRE LLPRVRIRFV SVTELSSDGL
GSRKFKEKPW MMDEIFTQDK GVVFNYHGYP NTIKKLIFDY KGSRRFRIKG YEEEGSTTTP
FDMGVRNGTS RYHLVIDMAY KLFQQGVIDE TKHVSITTDM LQRLVDHRNY IKANGVDPVE
IENWIWTR
|
|---|
| |