Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2848 |
Symbol | rnc |
ID | 4253419 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3401334 |
End bp | 3402014 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638119483 |
Product | ribonuclease III |
Protein accession | YP_734976 |
Protein GI | 113971183 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0494386 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACCGA TTAAAAATTT GCCACGTTTG TGTCGTACTT TGGGTTATGA GTTCAAGAAT ATTGAGCTTC TTACCCAAGC GTTGACCCAC AGAAGTGCGG CAAATAAGCA CAACGAGCGT TTAGAGTTTT TAGGCGATTC GATTTTATCT ATTGTGATTT CAGACGCCTT ATACCATCAG TTTCCTAAGG CGACTGAGGG TGATTTGAGC CGGATGCGCG CCACCTTAGT GCGTGGTGAT ACGCTCACCT TGATTGCTAA GGCCTTTAAG CTTGGGGATT ATTTATTCTT AGGCCCTGGT GAGTTAAAAA GCGGTGGTTT TAGACGTGAG TCTATCTTGG CCGATGCGGT CGAGGCGATT ATCGGCGCAA TCTACTTAGA TTCCGATCTC GAAGTGTGCC GTAAATTGTT ACTGCATTGG TACGCCGAGC GTTTGGCCGA GATCCAACCC GGCGTGAATC AAAAAGACGC TAAAACCTTA CTGCAAGAAT ATTTACAAGG GTTAAAGAAG CCGCTACCCG ATTACCAAGT AATCAATATA GAAGGCGATG CCCACGATCA AACATTCACT GTTGAATGTC GTATAGATGA CTTGAGCGAA AGCGTGATTG GCGTAGCGAG TTCGCGCCGT AAAGCCGAGC AGATTGCCGC GGCTCAAGTA TTGGAGTTAC TGAAGAAATG A
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Protein sequence | MEPIKNLPRL CRTLGYEFKN IELLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ FPKATEGDLS RMRATLVRGD TLTLIAKAFK LGDYLFLGPG ELKSGGFRRE SILADAVEAI IGAIYLDSDL EVCRKLLLHW YAERLAEIQP GVNQKDAKTL LQEYLQGLKK PLPDYQVINI EGDAHDQTFT VECRIDDLSE SVIGVASSRR KAEQIAAAQV LELLKK
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