| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2742 |
|---|
| Symbol | |
|---|
| ID | 4253313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3274162 |
|---|
| End bp | 3275715 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638119377 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_734870 |
|---|
| Protein GI | 113971077 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAATTG ATCGTTTGGT TCCCCGCTTA GTGATTGGCG GGGCTTGCGC TCTGCTCAGC
GGCTGTACCG TGCTAGGCCC AGACTATCAA CAGCCAGAAG TGCCAGAGAT CCAAACCTGG
CAGAGCGCCA GTTCGCAGTT ATTTAGCGCG GCGCCATCGG CCAGCGATTA TCAGCAATGG
TGGTCGCAAC TTCAGGATCC TGTGCTCAGC AGCTTGATTG ACGAGGCATT GCTGAAAAAT
CCGGATGTGC GGATTGCAGG CTTGCGGATA CTCGAAGCGC AAGCACAATT AGGGATAGCC
GAGAGTCTGC GCAATCCTCA GTTAACCCAA GCCACTGCCC AATGGCTTGG CGCAGGTCAA
ACCCAAAGCG GCAACAGCAC CTCGGGCAGC AGTTACGGCG CAGCATTCAA TCTTGGCTGG
GAACTCGATT TTTGGGGTAA ATTCCAGCGA GGTATCGAAT CGGCCGATGC AAACTACTTT
GCCACTATCG CCCAATATGA TGATGTGCAA GTGTTGATGA TTGCTCAAGT GGCACAGCTG
TACGTCACCA TTCGCACCCT AGAGGCGCGG CTGCAAATTG CCCATGATAA TGCCCAAATC
CAAAAACGTA GTTTAGAAAT CACTCAGCAC CAGTTTCACA GCGGCAACAC CGCCGAGCTG
GACGTGCAAC AGGCTAAGAC CCAGTATTTA GGCACTCTTT CGACGATTCC GACATTAGAG
ACGAATCTGC GCCACAGCCA AAATGCCCTC AGCACACTAC TGGCCAGAGC GCCGGGGCCA
CTTCCCGAAA TGGCGAGCAA TACCGGCGTG ATCCCACAGG GGCAATTGGC ATTAGTCACT
GAGATGCCTG CCGATTTATT ACGACGGCGC CCTGATGTAC GCACCGCCGA GCGCCAGCTC
GCGACCCAAT CAGGGCAGAT TGGGATTGCC GAGAGCGATT TGTATCCCTC TATCACCTTG
GCTGGCACGC TAGGATTAAA TGCCACGGGC AGCGGCCACA GTATTTTCTC TTGGGGTGTG
GGGCCATCGA TTAGCTGGAA TATCCTCGAC AGCGGTCGGT TGACCAATCA AATCTTGGTG
CAAGATGCAC GCTTTGAGCA ATTACACGAA GTCTACCGTG AGACAGTGTT TAAAGCGGCG
CGGGAAGTCG ATGATGCCGC CATTGCCTTT GCCAATAGCG CAACGGAAAT TACTTTACTA
ACGCAAACAG GTGAAGCCGC GAGTCGCTCA CTCGAGATTG CCAACACTCA ATATCGTGAA
GGCATGGCAG ATTTCCAGCG TGTGCTCGAT TCTCAACGCG CCCTCTTTAG CCAACAAGAA
CGGCTCGTAA ACAGTCGCGG CGCCCATATT GGCAATCTCA TCACCCTTTA CAAAGCGCTC
GGCGGTGGAT GGGAGCAAGG GCGACAACGC CCATTAGTGA GTCCAGAGGT AGATAAAAAG
CTTCGTAAGC GTGATGAATG GCTGCCGTTA CTAGATGTAG TTAAGCCCAA AGCGGGTACT
CCAGCAGATC CTCAGCCAAC ATCGACTATT CAAAAGGGAA TTGTGAATGA CTGA
|
|---|
| Protein sequence | MIIDRLVPRL VIGGACALLS GCTVLGPDYQ QPEVPEIQTW QSASSQLFSA APSASDYQQW
WSQLQDPVLS SLIDEALLKN PDVRIAGLRI LEAQAQLGIA ESLRNPQLTQ ATAQWLGAGQ
TQSGNSTSGS SYGAAFNLGW ELDFWGKFQR GIESADANYF ATIAQYDDVQ VLMIAQVAQL
YVTIRTLEAR LQIAHDNAQI QKRSLEITQH QFHSGNTAEL DVQQAKTQYL GTLSTIPTLE
TNLRHSQNAL STLLARAPGP LPEMASNTGV IPQGQLALVT EMPADLLRRR PDVRTAERQL
ATQSGQIGIA ESDLYPSITL AGTLGLNATG SGHSIFSWGV GPSISWNILD SGRLTNQILV
QDARFEQLHE VYRETVFKAA REVDDAAIAF ANSATEITLL TQTGEAASRS LEIANTQYRE
GMADFQRVLD SQRALFSQQE RLVNSRGAHI GNLITLYKAL GGGWEQGRQR PLVSPEVDKK
LRKRDEWLPL LDVVKPKAGT PADPQPTSTI QKGIVND
|
|---|
| |