Gene Shewmr4_2708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2708 
Symbol 
ID4253279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3229867 
End bp3231165 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content49% 
IMG OID638119343 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_734836 
Protein GI113971043 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR02966] phosphate regulon sensor kinase PhoR 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000004963 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000358257 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTCGACT CTTATTCAGG GTACCGGTTG TTTTCGCGCT TAGCGGTGTT CTTACTGCTT 
TGTTTGCTAA TTGGTTTATT GGTAGGGAAA CCCCTCTGGA TACTTATCAT CGGATTGCTT
GGACTGGTGT TCTGGCATTA CCGTCAGTTA GCTCGTCTCA ATTTTTGGTT ATGGCGTGAT
AGAAAATTAA CGCCTCCCCA GGGCAGTGGT AGTTGGGAAG GGGTGTTTAA CGGCATATAT
CGTCTGCAAG GTAAAAATCG TCGTCGAGTT GGCCAATTAG CCGCCTTGCT AGGACGTTTT
CGCCAAGGCG CCGAGGCCTT GCCCGATGCG GCAGTCGTGC TCGACTCAGA GCACAATATC
TTATGGTGTA ACAAGTTAGC TCAGCTGATT TTAGGCTTTG TCTGGCCACA GGATAATGGT
CAACGGATTG ATAACTTGAT CCGTCATCCT GATTTTTCCG CCTATCTTAA GGCGGGAGAA
TATAAGGAGC CCTTAGAGCT GGCCTCACCT GTCTCGGATA GGCGCCTACT CGAAATTCGT
ATCATGTCCT ATGGTGATAG GCAGCTACTG TTGATCGCCC GTGATATTAC GCGGATAAGA
CAGCTCGAAG GCATGCGTAA AGAATTTGTC GCCAATGTGT CACACGAACT GAAAACCCCG
CTCACCGTAT TGCAGGGCTA TTTAGAGATG ATGCAAAGCA TGGCCGAACC CGGTTCGATG
AACGCCAAGC CCTTAGCCTT AATGCAGCAA CAGACACGGC GAATGCAGTC GATGGTGGAG
CAGCTGTTGG TGTTATCACG TATCGAAGAT GCGGTCGATA TAAACCTTGA GAATACGGTG
AATATGGCGC AGTTGATGGA GGTCTTGAAG GAAGAGGCCA AGGCGCTGGC GCAGGATAAG
TATGAACTTA GCTTCCATTG TGAGGCGGGA CTCAACTCCC ATGGCAATGA GTTACAGCTT
AGAAGTGCTT GTTCTAATTT GATTTCGAAT GCGATTCGCT ACACAGAACC CGGCGGCAAA
ATTACCGTGC AATGGCGCAG TGTGGCGACC GGTGGTCTCT TTAGTGTGAC GGATACGGGC
GAGGGGATTG CGCCGCAGCA TATTAACCGT TTAACCGAGC GCTTTTATCG CGTCGACAGT
GCGCGCTCAA GGCAAACGGG TGGTAGTGGC CTTGGTTTAG CTATTGTGAA ACATGCCCTG
AGTCACCACC ACAGTGAGCT CAATATCAGT AGTGAATTGG GCAAAGGCAG CACCTTTAGC
TTTGTGATCC CACACCATTT AATCGTCCGT AAAAAATAA
 
Protein sequence
MFDSYSGYRL FSRLAVFLLL CLLIGLLVGK PLWILIIGLL GLVFWHYRQL ARLNFWLWRD 
RKLTPPQGSG SWEGVFNGIY RLQGKNRRRV GQLAALLGRF RQGAEALPDA AVVLDSEHNI
LWCNKLAQLI LGFVWPQDNG QRIDNLIRHP DFSAYLKAGE YKEPLELASP VSDRRLLEIR
IMSYGDRQLL LIARDITRIR QLEGMRKEFV ANVSHELKTP LTVLQGYLEM MQSMAEPGSM
NAKPLALMQQ QTRRMQSMVE QLLVLSRIED AVDINLENTV NMAQLMEVLK EEAKALAQDK
YELSFHCEAG LNSHGNELQL RSACSNLISN AIRYTEPGGK ITVQWRSVAT GGLFSVTDTG
EGIAPQHINR LTERFYRVDS ARSRQTGGSG LGLAIVKHAL SHHHSELNIS SELGKGSTFS
FVIPHHLIVR KK