Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2573 |
Symbol | |
ID | 4253144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3061783 |
End bp | 3062904 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638119208 |
Product | ABC-2 type transporter |
Protein accession | YP_734701 |
Protein GI | 113970908 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACGTA GAATTTGGGC CGTGGTCGTC AAAGAACTCA GGCAGCTATC GCGGGATCGC ATGACCTTCG GCATGATAGT GATGATCCCC TTAGTGCAGT TGATGCTGTT TGGCTATGCC ATCAACACCG ATGCGCGCCA TTTGCCCGCA GGTTTAGTGA ACTTAAGCGA TTCCGCCTAT AGCCTCGCCT TGGTCAAGGC GGTAGAAGCG ACTCAAGTCG TTGATTTTAA ACATCGGTAT TTGAGTGCCG CCGAGGCGGA TGCGGCCATC ACTCGGGGCG AAGTGAAAGC CGTGCTGTAT TTAGGCGCCG ATCTCGACGA GCGTTTAGTG CGACATCCCG CCTTTGCGGG GCAGGCCTAT TTTGCCGAGC CTGTGGGGCA ATGGTTGGTA GATGGCTCGG ATACTGTGGT CGCCTCCACC ATTCGCAGTT TAAGGCAAAT GCCACTGGAT GAAATTGCGG GCAGGGCGGT CAAATCGAAT CCCCCCAGTT TTGAGGTGGT GCAGTATTTT AACCCTGAGC AGCGTTCTGT GGTGAATATC GTCCCCGGCC TCTTGGGGGT CATTTTGACT ATGACCATGG TGATGTTTAC CTCGGCCGCG ATTGTGCGCG AGCGTGAGCA GGGCAATATG GAGTTTTTAA TCACCACGCC GGTGAGGCCA CTCGAGCTAA TGCTTGGGAA AATCACCCCT TATGTATTAG TGGGCTTTGT GCAATTGGCC ATTATTCTCA CCGCCGGACA TTTACTGTTT GCCGTGCCGA TCCGCGGCGG TTTGGACTCG ATTGCGCTGG CGGCCATGCT GTTTATCTGC GCCAGTTTGA CCTTAGGCCT AGTGATTTCG ACCATAGCGA AAACCCAGTT ACAGTCGATG CAGATGACGG TGTTTATCCT GCTGCCGTCG ATTCTGTTGT CGGGCTTTAT GTTTCCCTAC GAGGCCATGC CCGTGGCGGC GCAGTGGATT GCCGAGGCGT TACCCGCGAC GCACTTTATG CGTATGTCCC GCGCGATTGT GCTGAGGGAT GCCGAGGTGA GTGACTTGCA ATTTGATGCG CTGTGGATGA TTGGCTTTAC CTGTCTAGGG CTGCTGGTGG CAAGCCTGCG ATTCTCCAAA CGTTTGGATT AA
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Protein sequence | MLRRIWAVVV KELRQLSRDR MTFGMIVMIP LVQLMLFGYA INTDARHLPA GLVNLSDSAY SLALVKAVEA TQVVDFKHRY LSAAEADAAI TRGEVKAVLY LGADLDERLV RHPAFAGQAY FAEPVGQWLV DGSDTVVAST IRSLRQMPLD EIAGRAVKSN PPSFEVVQYF NPEQRSVVNI VPGLLGVILT MTMVMFTSAA IVREREQGNM EFLITTPVRP LELMLGKITP YVLVGFVQLA IILTAGHLLF AVPIRGGLDS IALAAMLFIC ASLTLGLVIS TIAKTQLQSM QMTVFILLPS ILLSGFMFPY EAMPVAAQWI AEALPATHFM RMSRAIVLRD AEVSDLQFDA LWMIGFTCLG LLVASLRFSK RLD
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