Gene Shewmr4_2516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2516 
Symbol 
ID4253087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2995206 
End bp2996438 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content48% 
IMG OID638119151 
ProductCdaR family transcriptional regulator 
Protein accessionYP_734644 
Protein GI113970851 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.882452 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00525591 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACGTTT TGGATCAACA CATCGCTAAA CAAATTGTGA GTCGCACCAT GAAAATCATT 
GGGCACAATA TCAATGTGAT GAATGGTCAG GGCGTGATCT TAGGTTCCGG CGATCCCAAA
CGTATTGGCT CGACCCACGA GGGTGCGCTG CTCGCTATCG CCCAAAACCG CAATGTGGAA
CTGAGTGAAG AAGTGGCCTC TGGTTTACAT GGTGTCAAAC CCGGCATCAA CTTACCCTTG
CATTATCAAG GGCAAATTAT TGGTGTGATT GGTATTACTG GCGATCCAGC CGAGTTAACC
CACTACGGTG AGCTGCTAAA AATGACCGCC GAAATGATTG TCGAACAAGC CAACCAGCAG
GATCAGCTGC AGTGGGAAAA TCGTCAGCGT GAAGAATTTA TTTTGCAGTT GATTAAGGCG
CAAACCGATG ACGATGAGCA ATTGCATCGC TGGGCCAAGC AACTCGACAT CGATATCAAT
TTGCCGCGAG TGGCCGCCAT AATTGAAGTC AGTGAAAAAC AATCCACGCC AACCCAGCAA
AAATCCGCTG CGTTTACTTC ATTAGCTCAG AGCGAGCAAA GCGCGGACGA GCGTAATCCC
AGAGTCAGCG AAATCCTCAA GCAAGTGCTG CATTTACTGC AAAATCCCGA TCGCGGCAAC
TTAATTGCCA TGACCTCGAT GTCGCAACTG GTGATCTTAA AACCGGCCTT TTTGGATGGT
AAACAGTGGG ATCCTGAGCT TGAAAACCAG CGTATCGATA AACTGCTGCA GCGTTTACCG
GCGCAGATGG ATTTAAATTT TAAAATCGCT CTTGGACATT TTTTCCCTGA AAAAGGCGGC
ATTGCACGCT CCTACCAAAC CGCGCAGGAA ACCTTGAACT TAGGCAAGCA GCTTAACCCC
GAGGGCACTA AATACCTGTT TGAAGACTAC TCCTTGCAAG TGCTGTTATC TGGGCTCAAG
CATGATTGGC GTGGTCAAGC GCTGGCCAGC CCCTACCAAC AATTAGCCAA GGCCGATAAA
AATGGTCAGC TACGCAAAAC CCTAGCCGCC TATATCACTC ACTTTGGTGA TGCACAGCAA
TGCGCCAATG CGCTGTTTAT TCACCGAAAT ACCCTAAGAT ATCGGTTAGA TAAAATTCAG
CAACTCACCA AGAGTGACAT CCATTCCCTC CACGGATTGT TAAGCCTTTA TCTTGGCCAG
TTGATAGATA CCTCAAATTA CCGACTCGAG TAG
 
Protein sequence
MYVLDQHIAK QIVSRTMKII GHNINVMNGQ GVILGSGDPK RIGSTHEGAL LAIAQNRNVE 
LSEEVASGLH GVKPGINLPL HYQGQIIGVI GITGDPAELT HYGELLKMTA EMIVEQANQQ
DQLQWENRQR EEFILQLIKA QTDDDEQLHR WAKQLDIDIN LPRVAAIIEV SEKQSTPTQQ
KSAAFTSLAQ SEQSADERNP RVSEILKQVL HLLQNPDRGN LIAMTSMSQL VILKPAFLDG
KQWDPELENQ RIDKLLQRLP AQMDLNFKIA LGHFFPEKGG IARSYQTAQE TLNLGKQLNP
EGTKYLFEDY SLQVLLSGLK HDWRGQALAS PYQQLAKADK NGQLRKTLAA YITHFGDAQQ
CANALFIHRN TLRYRLDKIQ QLTKSDIHSL HGLLSLYLGQ LIDTSNYRLE