| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2491 |
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| Symbol | |
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| ID | 4253062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2958879 |
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| End bp | 2960744 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119123 |
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| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
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| Protein accession | YP_734619 |
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| Protein GI | 113970826 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00102651 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0498143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGAAA AGATCCGCGA CGGTTCGCAA GGCGTGATTG CTAAAGGCAT TCTCGTACTT
GTGATTTTAT CTTTTGCATT TGCAGGCGTT AGTAGCTATT TAGGCTCACA ATCGGACGTC
CCTGCCGCAG AAGTCAACGG TGACAAGATC ACTAAAGCCG AGTTAGAGCA GGCCTATCAG
AGCGAACGCG CTCGTATGGA ACAGCAACTG GGCGAAATGT TTGCTGCGTT ATCTGCCGAC
GAAAGATACC TAGAAAGCAT AAAGCAGAGC GTACTCGAAC GTTTAGTCGC CGATAAGCTG
ATCGACCAAG CTGCCGCCGC TATGGGGCTG CGAGTGTCTG ACGAGCAAAT TATTGCGGCG
ATTAAATCTG AACCCGCTTT CCAAACCGAT GGCAAATTCG ATAACGATCG TTATCAGGCA
ATTTTGCGTC AGTTAGGCTA TCAGCCACAA ACCTTCAGAA GCATGATGCG AGTTGATATG
ACTCGTCGTC AGTTAACTGC GGCGTTAGTG GGCACTGAAT TTGTTTTACC TGGTGAAGCT
AAACAATTAG CTGAGCTGCA AGGTCAGACT CGTGACATTC GTTATTTAGT GGTGGATTCT
GCACCATTCC TCGCGAATGC CTCTGTGACT GACGAGCAAG TTAAAAACTA CTATGACACC
AACCAAGGCC AATTTATGAG CCCTGAGAAG GTGAGCTTAG AGTATGTAGA GTTAAATTCG
GCTGATTTTG CGAAAGATAG CAAAGTGACC GATGAAGAAG CTCAGGCTTA CTACGATGAA
CACAAGACCC AATATGTGTC TAACGAGAAA CGTTTAGCGG CGCACATTCT GATTGGCCCA
GGCAGCGATG AAGCGGCGGC TAAGGCCAAG GCCGAAGATT TAGCCAAGCA GTTAGATAAC
GGCGCTGATT TTGCTGAGTT AGCCAAAGCC AATTCTGAAG ACACCTTAAG TGCGGAGCAG
GGCGGTAAAT TAGACTGGTT TGAACCTGGT GTAATGGACC CAAGTTTTGA CACCGCGCTG
TTTGCCCTGA AAAAAGGCGA GCATTCTGCT GTAGTGAAAA CTGATTTTGG TTTCCACATC
ATCAAACTGT TAGACGTTCA ACCTGGAACA ACAGTGCCAT TTGCAGATGT GAAAGCGAAG
ATTGTGGCTC AACTACAAGA GAAGAAAGCG GTCGATCAAT TCTATAGCTT GCAGAGCAAA
CTGGCTGATA CTAGCTACGA AGTACCTGAT ACCTTAGCCG AAACCGCTAA AGTCGTTGGC
GTTGAGATTA AGACGACGCC ACTGTTCTCA CGTGATGATG TGCCTGCTGC ATTGAACAAG
CCTGATGTAG TTAAAGCGGC ATTCTCTGAC ACTGTTCTGC GCCAAGGCCT AAACAGTGAA
GTGCTTGAAC TTGAGCCAAA CCATGTAGTG GTTATCCGTA TGAAGGAACA TCACGATGCA
GGCACTATGC CATTAGCAGA AGTGAAGGCC GACATTAGCG ATCGCTTGAA GCAAGACCAA
GCAAACGAAG CGGCTCGTGC TAAAGCACAA GAGCTGATGA CGCAAGTCAA AGCGGGCGCT
GCCGATGTGA CCTTAACCGC TAAGGCTAAA CTGGGCCGTG GCGCACAAGA CGTTGACGCT
GCTATTGTGG GTAAAGCTTT CCAAATGCCA ACACCAAGTG CAACGCCTGT GGTTGACACT
GTTGGGTTAG CTAATGGTTA TGCTGTAATC GCACTGGATA AAGTCAACGC GGCTGAGTCT
GTTAGCGATG AGTTAGTTAA TGCACTGAAA CAACGCTTAA ATGCACAATA CAGCGAAGCA
GATTACCGCG GCCTGATTGA GTCACTCAAA GCGAATGCGA AAATCGATTA CCCTGTTGAA
GGTTAA
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| Protein sequence | MLEKIRDGSQ GVIAKGILVL VILSFAFAGV SSYLGSQSDV PAAEVNGDKI TKAELEQAYQ
SERARMEQQL GEMFAALSAD ERYLESIKQS VLERLVADKL IDQAAAAMGL RVSDEQIIAA
IKSEPAFQTD GKFDNDRYQA ILRQLGYQPQ TFRSMMRVDM TRRQLTAALV GTEFVLPGEA
KQLAELQGQT RDIRYLVVDS APFLANASVT DEQVKNYYDT NQGQFMSPEK VSLEYVELNS
ADFAKDSKVT DEEAQAYYDE HKTQYVSNEK RLAAHILIGP GSDEAAAKAK AEDLAKQLDN
GADFAELAKA NSEDTLSAEQ GGKLDWFEPG VMDPSFDTAL FALKKGEHSA VVKTDFGFHI
IKLLDVQPGT TVPFADVKAK IVAQLQEKKA VDQFYSLQSK LADTSYEVPD TLAETAKVVG
VEIKTTPLFS RDDVPAALNK PDVVKAAFSD TVLRQGLNSE VLELEPNHVV VIRMKEHHDA
GTMPLAEVKA DISDRLKQDQ ANEAARAKAQ ELMTQVKAGA ADVTLTAKAK LGRGAQDVDA
AIVGKAFQMP TPSATPVVDT VGLANGYAVI ALDKVNAAES VSDELVNALK QRLNAQYSEA
DYRGLIESLK ANAKIDYPVE G
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