| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2484 |
|---|
| Symbol | |
|---|
| ID | 4253055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2951784 |
|---|
| End bp | 2953409 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638119116 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_734612 |
|---|
| Protein GI | 113970819 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0213722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGC TAATAAGACG CCTGTGCCTA TCAACTGCAG TTTTCTGCAT GAGTGGGTTG
TTGGTTGCAT GTGGCCCCCA ACGACTCCCT TCCGGTTTGG TCTATTGTTC CGAAGGGAAT
CCCGAGTCTT TTAATCCGCA GTTGGTGACC TCTGGCACCA CCATCGACGC CACCTCACAC
CAAATTTATA GCCGCTTAGT GGACTATGAT GCGATTTCAG GCCAGCTCGT GCCTGCGCTG
GCCACCCGTT GGGCCGAGAG TGACGATGGT TTAAGCTATC GTTTCACTCT AAGGGAAAAT
GTTAAGTTTC AACATTCATC CCGTTTTACA CCAAGCCGCG ACTTTAACGC CGACGATGTG
CTGTTTTCCT TCAATCGGAT TATCGATAAG CATCACCCTT ACCATGGCGT ATCACGTACC
GGTTATCCTT TTTTCCAAAG TATTGGATTT TCAGAACAAG TCAAAAGTGT CGAAAAAATC
AATGACCATG AGGTCATCTT TCGTTTAGCA CGCAAAGATG CGTCGTTTTT ATCAAATCTA
GCGACAGACT TTGCCGTCAT CCTCTCTAGC GAATATGCCG ATCAGCTACT TGCGCAGGGG
CACCCTGAAA ATCTTGATCA TTTCGCCATA GGTACAGGGC CTTTTACCTT AGTGCATTAC
GCCAAAAACG AATATGTTCG CTATCGCCGC AATCCCGACT TTTGGGGCGA GCCCGCCAAA
GTCGATATGC TGGTGTACGA TATCACCCCA AAAAGCACTG TCAGACTGGC CAAACTTATC
GCTGGTGATT GCAGCGTATC GGCCCTGCCC AAAGCGGGTG AGTTGCCCGT TATCAAGCAA
CATGAACAGC TGAGCATTGA GTCTCAACCC GGTCTTAACG TAGCCTTTTG GGCCTTTAAC
ACACAAAAGC CCCCTTTAGA TGATGTACGC GTGCGCCGCG CCCTCGCCTA TGCCGTAGAT
AAGCAAAATA TCTTACGGGC CGTGTATCAA AATACCGCCA TAGAAGCCAT AGGGGTGTTG
CCGCCAGCGT CTTGGGCCTA CGACAGCAAT AAAAAACTGT TAGATTACAA TCCACAAAAA
GCGCGTGATT TGTTAAAAGA AGCGGGAATA AAACATCTCA GCATCGATAT TTGGGCCATG
CCCGTTGCCC GCGCTTACAA CCCTAATGCG TTGAAAACCG CCGAGTTAAT TCAATCTGAC
TTGGCCAATA TCGGTGTTAA GGTCAATATC ATCAGTTACG ATTGGAGCGT CTTTAGCCAA
AGATTGAGCC GGGATGAATA TGACTCAGTC CTCATCGGCT GGAACGCCGA TAACAGCGAC
CCCGATAACT TCTTCACGCC ATTGCTGAGT TGCTCGGCGA TGCAATCAAA CAACAACCGC
TCTCGCTGGT GCAATAAAGA GTTTGATGCC ATTCTAGACA GAGCGAGGGA AGTCTCGACG
CAGGCCGAGC GCAAGGAAAT TTACCAAGAG GCCGAGGCCT TCTTAGCCGA GCAAGTGCCA
ATGTTGAGTC TGGCCCACGC CAAGCGAGTC GCACTCACTC GCAGCAATAT CCATGATATG
CAGTTAACCC CCTTTGGCGG CATCTCATTT GCCCGAACCA GCCAAGCTGA GCAGGAGACA
CACTGA
|
|---|
| Protein sequence | MSVLIRRLCL STAVFCMSGL LVACGPQRLP SGLVYCSEGN PESFNPQLVT SGTTIDATSH
QIYSRLVDYD AISGQLVPAL ATRWAESDDG LSYRFTLREN VKFQHSSRFT PSRDFNADDV
LFSFNRIIDK HHPYHGVSRT GYPFFQSIGF SEQVKSVEKI NDHEVIFRLA RKDASFLSNL
ATDFAVILSS EYADQLLAQG HPENLDHFAI GTGPFTLVHY AKNEYVRYRR NPDFWGEPAK
VDMLVYDITP KSTVRLAKLI AGDCSVSALP KAGELPVIKQ HEQLSIESQP GLNVAFWAFN
TQKPPLDDVR VRRALAYAVD KQNILRAVYQ NTAIEAIGVL PPASWAYDSN KKLLDYNPQK
ARDLLKEAGI KHLSIDIWAM PVARAYNPNA LKTAELIQSD LANIGVKVNI ISYDWSVFSQ
RLSRDEYDSV LIGWNADNSD PDNFFTPLLS CSAMQSNNNR SRWCNKEFDA ILDRAREVST
QAERKEIYQE AEAFLAEQVP MLSLAHAKRV ALTRSNIHDM QLTPFGGISF ARTSQAEQET
H
|
|---|
| |