Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2449 |
Symbol | |
ID | 4253020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2911937 |
End bp | 2914993 |
Gene Length | 3057 bp |
Protein Length | 1018 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119081 |
Product | SMC domain-containing protein |
Protein accession | YP_734577 |
Protein GI | 113970784 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00634989 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000799023 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAGCCAC TCTCGCTGTC GATGTCGGCC TTTGGTCCTT TTGCTTCGAC TCAAACCATT GATTTTACCG AACTGGGGAA TAACCCCTTA TTCCTGATCA ACGGGCCAAC AGGCGCGGGC AAAACCACGC TGCTCGACGG AATTTGTTTT GCGCTCTATG GAAAAACCAC GGGTAACGAG CGTGAAGGCA GCCAGATGCG CTGCGATATG GCCGATGATA GCGTACTGAC TGAGGTGACC TTTCATTTTC AATTAGGTAG TACGGGTTAT CGTATTCGCC GCGTCCCCGA GCAGGAAAGA TTAAAGAAAA GCGGTGATGG CTCAACGGTA CAAAAGAGTG AGGCGCAGCT GTATAAGATT GCCCCGGATG GCAGTGAAAC CCTTATCGTC GCCAGTAAAG TGTCAGACGC CACGGCCGAA ATTGAGGCAT TAACCGGCCT AGATGTGGAG CAGTTCCGCC AAGTGATGGT GCTTCCGCAG GGGAAATTTC GCGAATTGCT GATGGCCGAC TCTAAGGCGC GTGAGCAGAT TTTTAGCCAA TTATTCCAAA CCCATATCTA TAAGCGCATC GAAGATACTC TAAAGGCTAA GGCGGCGGAT ATTCGCAATC TTGTCAAAGA GCAGCGCGCC CGCCGTGACG GTATTTTGCA AACGGCAGCA CTCACATCCG ATGATGAACT TACTGCAGAG TTGAGTCGCA TTGAACCCGA ATTCGCGGCG GCGACGGCAG CAAAAGAGCA GAGCGTTGCG GCGCATTTGG CGGCATTAAA ACAGCGTGAT AGCGCGCAGC AACTCTTTGC TGAATTTACT CGCTTACAGG AATTGCAGGC TGAGGCGCTT AGCCTTAATG AGCAGCAAGC GCAAATTGCA ACCCAAACGA CACGGCTTGA GGTGGCCAAG CAAGCACTGC GGGTAAAACC CTTATTAGAT AATGCCTTGT CGCGGGAGCA AGAAGCGAGT GTTGCAGCCG CTCAGCGCGA TAGCGCACAG TTGACGCTCG ATGCCGCTAA GCTCGCACTC TCTCATGCTG AAACTGCGGC GCAGGAAATT ATCCCCCTTG AACATAAGCT GCGTGAGGTT GAGCAGCAAA ATAGTCATCT CAGTGCGTTA GTGCCGCAGC TGGCAGAGTT TGCCAGCCTG GAACAAGCTT TAGCGCAGGC AAAAGAGATA CTGCAACACA CCAAATTGCA GGGGCAGGAG AGTAAAACTG CACTTGCCAC CTTAGTTGAA CAGCGCGGTC ATTGTGAGAA TCAACTGCCA GCCTTGCAAT CGCAAAGTGA GCAGCAACTT GCCACTGCGC AGGCGCTGCA GCAGCACCGT CATATGCTCG AGCAGTTCAA GCAGTGGCAG CAGATCTGTG CCAAAGTTGC GCATACTCAA GGGGTTCTTG AGCAGGTCGG TTTACAAGGA AAAGCGCTTA ATACCCAATA TCAAGCAGCT TCAACGGCTT ACAAGTCTTT GCAACTGAAA TGGTTTCAAG GTCAGGCAGC CATTTTAGCT AGAGAGTTAA AACCCCATGA GCCATGCCCG GTTTGTGGCA GTTCGACCCA TCCTCAGCCC GCGGTGAGTC ATGAGGATTT ACCAACGGAT CTACAATTGC AGGCGGCGCA GGATGCCGAG GCCTTGGCGC TCGATAATCT CAATAAAGCG CGGGCAGAAT ATCGTGGGCT GCAAAAGCAA TTAGAAGCAC AGCAACAGCA GGCGAATGAT CTGGCAACAG CCCTTGGTGA TAAGGTTGAG TTGTCACTCG AATCCCATAG CCAAACCTTA GAAAGGCTCA TGCAGCAAGC GAAGCAAGCC GATGATGCGG CGCAAGCGCT GCAGCTGTTA CAGCAACAGA TCAAAACCTT GCAGCAGCAA GAGTCGACTT TGGCGCAGCA ACTCGAACTT GAGCGTGAGC GTTACCGTGA GCAAGAAGGC AAAGTCGAGC GGCTATCGGG TCAACTTGCG GAAAAAGCGC TGAGGATCCC AGAAGAATAC CGAACACTGG ATGTATTGAA TCAAGCGATT GCGAATAACC AGCAACAACT TGAACAGATA AAACGTCAGA TTGATGTATT GAGAACCGCG CAGCAGCAGG CAACGCAGCA GAGTGTGGCG GCGCAAACGG CATTATCGGC GGCGATAGAG CGTTGTCATG CTACGGTAGA GCTGCAGGCG CAAGCACAGC AGACACTTCA GACGGCGCTC GATAACGCGG GCTTTATTGA TAGGGATGCA TTGCGCGAAG CCTTGTTAAC CGATGAGCAA ATGCAGACGC TGGCCGAGGG TAAAGAAACC TACCACAGAC AGTGCGCCTT AAATCAGTCG CAACTGACTC AGCTTACAAC CAAGTTGAGC GAGTCGACAT CACCCGATCT TGACGCCTTA GAGGCCTTGC TCACTGAGCG ACTCGCGCAG CTTAAAAATG CGGAAGAGCT ATGGAGTCAA CTGAATACTC GGCTCACCCT GCTTAACAAT ACCCAAACTC AGCTGGCGGT GGTCGATCAA AAGGCCAAAT CCCTCGAGGA TGAATACGCT GTGATTGGCA CCTTGGCCGA TGTTGCCAAT GGTAATACGG GCAACAAAAT TTCCCTGCAA CGCTTTGTGC TTAGCGTATT GCTCGACGAT GTGTTGCTTG CGGCAACGCA GAGGCTGCAT TTAATGAGTA AAGGGCGCTA CCGATTATTG CGCAAAGAGG ACAGGGCGAA GGGCAATAAG GCCTCAGGGC TAGAGCTTGA AGTCGAGGAT GCCTACACCT CTAAAGTGCG TCCCGTGGCG ACCTTAAGTG GCGGTGAGAG TTTTATGGCA GCCTTGTCGA TGGCTTTGGG CTTATCGGAT GTGGTTCAAG CCTACGCAGG GGGGATAAAA CTCGATACCT TATTTATCGA CGAAGGCTTT GGCAGCCTAG ATCAGGACTC CCTCGAACTT GCCATTCGCA CGCTGATGGA TTTGCAGTCG GCGGGGAGGA TGATTGGGGT GATTTCCCAT GTATCCGAAA TGAAAGAACA GATAGGCACT CGAATTGATA TCTTGAAAAC CTCCCATGGG AGTGAAATCA AGGTGATTTT GCCTTAG
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Protein sequence | MKPLSLSMSA FGPFASTQTI DFTELGNNPL FLINGPTGAG KTTLLDGICF ALYGKTTGNE REGSQMRCDM ADDSVLTEVT FHFQLGSTGY RIRRVPEQER LKKSGDGSTV QKSEAQLYKI APDGSETLIV ASKVSDATAE IEALTGLDVE QFRQVMVLPQ GKFRELLMAD SKAREQIFSQ LFQTHIYKRI EDTLKAKAAD IRNLVKEQRA RRDGILQTAA LTSDDELTAE LSRIEPEFAA ATAAKEQSVA AHLAALKQRD SAQQLFAEFT RLQELQAEAL SLNEQQAQIA TQTTRLEVAK QALRVKPLLD NALSREQEAS VAAAQRDSAQ LTLDAAKLAL SHAETAAQEI IPLEHKLREV EQQNSHLSAL VPQLAEFASL EQALAQAKEI LQHTKLQGQE SKTALATLVE QRGHCENQLP ALQSQSEQQL ATAQALQQHR HMLEQFKQWQ QICAKVAHTQ GVLEQVGLQG KALNTQYQAA STAYKSLQLK WFQGQAAILA RELKPHEPCP VCGSSTHPQP AVSHEDLPTD LQLQAAQDAE ALALDNLNKA RAEYRGLQKQ LEAQQQQAND LATALGDKVE LSLESHSQTL ERLMQQAKQA DDAAQALQLL QQQIKTLQQQ ESTLAQQLEL ERERYREQEG KVERLSGQLA EKALRIPEEY RTLDVLNQAI ANNQQQLEQI KRQIDVLRTA QQQATQQSVA AQTALSAAIE RCHATVELQA QAQQTLQTAL DNAGFIDRDA LREALLTDEQ MQTLAEGKET YHRQCALNQS QLTQLTTKLS ESTSPDLDAL EALLTERLAQ LKNAEELWSQ LNTRLTLLNN TQTQLAVVDQ KAKSLEDEYA VIGTLADVAN GNTGNKISLQ RFVLSVLLDD VLLAATQRLH LMSKGRYRLL RKEDRAKGNK ASGLELEVED AYTSKVRPVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF GSLDQDSLEL AIRTLMDLQS AGRMIGVISH VSEMKEQIGT RIDILKTSHG SEIKVILP
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