| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2448 |
|---|
| Symbol | |
|---|
| ID | 4253019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2910369 |
|---|
| End bp | 2911664 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638119080 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_734576 |
|---|
| Protein GI | 113970783 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.093884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000000665253 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAGACAG GTAAACCCAA TTTGGCTAAT TTTCCGCAAA TTCGTTTGCA GAACTTATCT
TCAGCCCAGA AAAATATTCT CCTTGTTGGA GGTCTATTAA TCGGTGCGGC GATGTTAATG
CCGAATGCTA ATCATGTGGT ACCTACTGCT CAACGTATTC CCGTCGCGCT CGATATTGAG
ACTATATTGC CACAGATATC AGAGCCTGTA GAAACCGCTC CGATTGTCGA TAATACCCCG
CATTTTGAAC GTGTCATCGC CTCTGGTGAT ACTTTAAGCG CTTTATTTTC TAAGGCGGGT
GTCGATCAGC AAACCATGTA TAAGGTATTA GAAGCCGATT TAAACATTCT AGCGCTAGAT
ACCTTATTAC CCGGTAACCG TATTCAATTT TGGCTGGATA ATGAAGGCCA ACTGCAGAAG
TTAGAGCTGT ATTTTAACGC CGCACGCCAA GTAGTATTTA CTCGTTATGA AGATGGCAGC
TTTAACGTTG AAGAAATTAA CGTTGAAGGT GTGTGGCAAA ACCGTATTCT CACTGGCGAT
ATTAAAGGCT CATTCTACGT TTCAGCGCAA AAAATGGGTT TAGCGGCGGC CGATATTCAG
CGGATTGAAG ATTTACTCAA AGAGAAAGTG AATTTTGCAC GGGATTTACG TGCAGGTGAT
AAATTTTCTG TTTTGGTAAA TGATCAATAT GTTGAGGGCG AAGCAACGGG AAGCAGTCAA
ATATTAGGCG TGAGCATTAA AACGGGTCGC TCCGAAATTA GTGCATTCCA ACATACCGAT
GGCAGTTATT ACGATGCTAA AGGCCAAAGC TTAGTGCGTG CCTTCCAACG TATTCCATTA
GCCAAACAAC CACGCATGAG TTCTCGTTTT AACCCGACGC GTAAACATCC TATTACTGGC
CGTATTTCTC CCCATAACGG TACCGACTTT TCAGTGCCTA TTGGTACTAA AGTTATTGCT
CCTGGCGATG GTGTCGTAAG CTTAGTCACC GATCACCAAT TCGCGGGTAA ATATATTGTG
ATTGAACACG GTGGTAAGTA CCGTACACGT TATTTACATC TTTCTAAGGC ATTAGTGCGT
AAAGGTCAGA GAGTGACTCG TGGCCAAGTG ATTGCTTTAT CAGGCAATAC TGGACGTTCT
ACCGGTCCAC ATTTGCATTA TGAATTCCAC GTTAATGGTA GACCTGTGGA CCCAATGAGA
GCCGATATCC CGATGGCAAG CCAATTAGCG AATCAAGAAT TACGTACCTT CACCAATATC
GTGAAGAGCC GCCAAGCGTT AATGAATTTA GGTTAA
|
|---|
| Protein sequence | MQTGKPNLAN FPQIRLQNLS SAQKNILLVG GLLIGAAMLM PNANHVVPTA QRIPVALDIE
TILPQISEPV ETAPIVDNTP HFERVIASGD TLSALFSKAG VDQQTMYKVL EADLNILALD
TLLPGNRIQF WLDNEGQLQK LELYFNAARQ VVFTRYEDGS FNVEEINVEG VWQNRILTGD
IKGSFYVSAQ KMGLAAADIQ RIEDLLKEKV NFARDLRAGD KFSVLVNDQY VEGEATGSSQ
ILGVSIKTGR SEISAFQHTD GSYYDAKGQS LVRAFQRIPL AKQPRMSSRF NPTRKHPITG
RISPHNGTDF SVPIGTKVIA PGDGVVSLVT DHQFAGKYIV IEHGGKYRTR YLHLSKALVR
KGQRVTRGQV IALSGNTGRS TGPHLHYEFH VNGRPVDPMR ADIPMASQLA NQELRTFTNI
VKSRQALMNL G
|
|---|
| |