Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2404 |
Symbol | |
ID | 4252975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2863104 |
End bp | 2864093 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638119036 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_734532 |
Protein GI | 113970739 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000151583 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCGTCG TTATAAGTAG ATGGCACATC ATGAATACAG AATCTCCACA GCTACAGGTG CAGTTGATCA CGATTGACGA AGACCACCTC GACCAACGAA TCGACAATTT TTTAATCACA GTGCTAAAGG GTGTTCCTAA GAGCATGATT TACCGTATCG TCCGTAAGGG CGAAGTACGG GTGAATAAAA AACGCATTAA GCCAGAGTAC AAATTACAAA TCGGTGATGT GGTACGCGTG CCTCCCGTCA GAATGGCTGA GCAGGATAAT CGTACTGCGC CTTCTGCTAA TCTGAGCAAA GTGTCTCAGC TTGAAGACCG AATTTTGCAC GAAGACAATC ATCTGATTGT TTTGAATAAG CCTGCTGGCA TTGCGGTACA TGGTGGCAGT GGCGTCGATT ATGGTGTGAT TGAAGCGCTG CGCTCCTTAC GTCCACAACA GAAATTTTTA GAACTGGTTC ACCGTCTCGA TAAAGACACT TCGGGCGTGT TGCTGGTGGC GAAAAAACGC AGTGCCCTTA AGCATCTGCA CGATCAACTG CGTCAAAAAA AGATGCAGAA AGATTACTTG GCCTTAGTCA AAGGTGAGTG GTCGGCGCAG GATAAAGTAG TTAAACAGCC GCTGTTAAAA TTAACGCTTA AGTCGGGCGA GCGTATCGTT CGAGTTAATG GCGAGGGCAA ACCCTCTGAA ACTCGCTTTA AGATTGTGCA GCGTTATCAA GGCTGTACGC TGGTTCAGGC GAGTCCTGTC ACTGGGCGTA CCCACCAGAT TCGGGTGCAT TGTCAATATA TGGGACACCC CATCGCCTGC GATGAGAAAT ACAGCGAGCA GACGTTTGAT GACAGTATGC GCGCACTTGG CCTGAGTCGA CTGTTTCTCC ATGCGGCAGA ATTGATGTTT ATTCATCCTG AAAACGATGA GGTGATGCGA GTCTCTGCAC CACTGGATGA TAATTTGCAG CAACTGTTAA GTAAGTTAAA GCGCGCTTAG
|
Protein sequence | MAVVISRWHI MNTESPQLQV QLITIDEDHL DQRIDNFLIT VLKGVPKSMI YRIVRKGEVR VNKKRIKPEY KLQIGDVVRV PPVRMAEQDN RTAPSANLSK VSQLEDRILH EDNHLIVLNK PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHLHDQL RQKKMQKDYL ALVKGEWSAQ DKVVKQPLLK LTLKSGERIV RVNGEGKPSE TRFKIVQRYQ GCTLVQASPV TGRTHQIRVH CQYMGHPIAC DEKYSEQTFD DSMRALGLSR LFLHAAELMF IHPENDEVMR VSAPLDDNLQ QLLSKLKRA
|
| |