Gene Shewmr4_2372 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2372 
Symbol 
ID4252943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2828185 
End bp2828586 
Gene Length402 bp 
Protein Length133 aa 
Translation table11 
GC content46% 
IMG OID638119004 
Product4-hydroxybenzoyl-CoA thioesterase 
Protein accessionYP_734500 
Protein GI113970707 
COG category[R] General function prediction only 
COG ID[COG0824] Predicted thioesterase 
TIGRFAM ID[TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family
[TIGR02799] tol-pal system-associated acyl-CoA thioesterase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000888459 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.224754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTTA ATTGGCCCAT TTCAGTCTAT TACGAAGACA CCGACGCAGG CGGCGTTGTC 
TATCATTCGA ACTATCTCAA TTTTTTTGAG CGGGCGCGAA CCGAGTGGTT AAGAGCCTTA
GGCGTAAGCC AGACTGCACT GTTAGCCGAT GATACAGCGT TTGTGGTTAA GCGGGCGGAA
TTGGATTTTA AAAGAGCCGC GCGTTTTGAA CAGAACCTTA TTGTAGAAAC TAAGGTCATA
GAGTTGAAAA AGGCCTCGTT GGTATTTCAT CAACGTTTGG TTGATCATCA GGGAGACTGT
TATTGTGAAG GTACAGTGCT AGTGGCCTGT GTTGCCTTAT CACGAATGCG TCCCCGAGCT
ATTCCCTTAA ATATTGTGCA GGAGTTTGAC AGTGCAAGCT GA
 
Protein sequence
MTFNWPISVY YEDTDAGGVV YHSNYLNFFE RARTEWLRAL GVSQTALLAD DTAFVVKRAE 
LDFKRAARFE QNLIVETKVI ELKKASLVFH QRLVDHQGDC YCEGTVLVAC VALSRMRPRA
IPLNIVQEFD SAS