| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2368 |
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| Symbol | tolB |
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| ID | 4252939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2824714 |
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| End bp | 2826042 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119000 |
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| Product | translocation protein TolB |
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| Protein accession | YP_734496 |
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| Protein GI | 113970703 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000751795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.188875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTT TGGCAAAATG GTTAGCATTG GCGGTTCTGC TTTGCACTAT GCCGGCAAAA
GCGGCGCTGG ATATTGTGAT CACTGAGGGT GTGGATGCGG CGCGTCCAAT CGCAGTGATG
CCATTCCAAT GGCAAGGAGC GGGTGCACCA CCTCAGGCGA TCGCCGATGT GGTGATGTCA
GATTTAATAC GTAGCGGTAC CTTCAAACCA TTAGATGAAT TAGGGTTACC ACAACGTGGT
ATCGGTGCTT TAGCCCAGTT TGACGCGAGT GCGTGGGCGA ATGTGGGTGC CGAAGCCGTT
GTTGTGGGTT CGGTAAAACC CTATGGCACA GATCAGTTTT TGGTGAGCTT TGACCTTATC
GATTTGGTTA AAGCGCAAAA CCAAGCGCTA AAAGGGCCTA CCAGTGCGAC AGAATTTTTG
ATGGATAGTC GCCAAACGGT GATTTCTGCG GCGCAGTTCC GTCAATATGG CCACCGTATC
AGCGATATCG TCTATGAGAA GCTGACGGGT ATTCGTGGTG CTTTCTTAAC CCGTATTTCC
TACGTGGTGG TTAACCACAG CCAGAAAGCG GCTTATTCAC TGATGATCGC CGACTATGAC
GGTTACAACG AGCAGATGTT ACTGCGCTCT CCAGAGCCGC TGATGTCTCC TTCTTGGTCA
CCCGATGGCC GTCGTTTAGC TTATGTGAGC TTTGAAAACA AAAAGGCTGA GATTTTTGTG
CAGGATCTTT ACACCCAAGT ACGTACTAAG GTGAGTAGCT TCCCAGGCAT TAACGGTGCA
CCGACATTCT CGCCCGATGG TAAGTCCTTA GCAGTGACCC TCTCAAAGGA TGGTCAACCT
GAGATTTACG TTATCGATAT CGCCACTAAG GCAGCAAAAC GTATTACCAA CCACTATTCC
ATCGATACTG AGCCATCTTG GTATCCCGAT GGCAAGTCAT TGTTGTTTAC CTCCGAGCGC
GGTGGTAGAC CACAGTTATA TCGTGTAGAT TTAAATTCAG GCAAAGTGAC CCGTGAAACC
TTTGAAGGTG AATGGAATTT AGGTGGTTCA ATTACCCCTG ATGGTCGCAG CATGATTTTT
GTGAATCGCA CAAACGGTAA ATTTAATATT GCACGTATGG ATTTAAGTAC GCGCTTTATG
CAGGTGCTGA CATCGACACG TTTGGATGAA TCTCCAAGTG TGGCCCCTAA TGGTACTATG
GTGATTTATG GCACTACGTA TCAAGGCAAG CAAGTTTTAG CAGCTGTTTC TACGGACGGA
CGCTTTAAAG CGAGATTACC GGTGGGTCAG GGTGAGGTGA AATCACCTTC TTGGTCTCCG
TTTCTCTAA
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| Protein sequence | MKILAKWLAL AVLLCTMPAK AALDIVITEG VDAARPIAVM PFQWQGAGAP PQAIADVVMS
DLIRSGTFKP LDELGLPQRG IGALAQFDAS AWANVGAEAV VVGSVKPYGT DQFLVSFDLI
DLVKAQNQAL KGPTSATEFL MDSRQTVISA AQFRQYGHRI SDIVYEKLTG IRGAFLTRIS
YVVVNHSQKA AYSLMIADYD GYNEQMLLRS PEPLMSPSWS PDGRRLAYVS FENKKAEIFV
QDLYTQVRTK VSSFPGINGA PTFSPDGKSL AVTLSKDGQP EIYVIDIATK AAKRITNHYS
IDTEPSWYPD GKSLLFTSER GGRPQLYRVD LNSGKVTRET FEGEWNLGGS ITPDGRSMIF
VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG
RFKARLPVGQ GEVKSPSWSP FL
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