Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2193 |
Symbol | |
ID | 4252766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2620583 |
End bp | 2621443 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118819 |
Product | LysR family transcriptional regulator |
Protein accession | YP_734323 |
Protein GI | 113970530 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0865555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCG ATTTACTTAA GACCTTTTTG GAAGTCTCCC GTACTCGTCA TTTTGGTAAG GCCGCGGAAA ATCTTTACCT TACCCGCAGC GCGGTGAGCT TTCGGGTCAA ACAGCTTGAA AGCATTCTTG GCGTCGCCTT GTTTGAGCGC CAACGCAACA ATATTCAGCC CACGCCAGCG GGCGAACGTA TGCTTGGGCA TGCCGAAGCG GTATTAACCG CTTGGGAGCG CGCCAAGCAG GATGTCTCCC TCAGTCAGTT ACAATCGACT CAACTCGCCA TTGGCGCAGG CCCCAATATC TGGGATGCCT ATTTGCAGGG GCATTTACAG CATTTGCATG TGGGATTACC AGGGGTTGCA CTTCGGACCG AAGTCTTGCC ATTAACTGTG ATGACACGGC AATTGATGGA CCGGACCTTG GACTTGGCGA TTTCCTTCGA CCCACCCAAA CTGGACCAAT TCGAACTGGT GCAACTAGGG CAAATCAATT TATTGCTGGT ATCCAAAACC ATGGATGTGG CGGTCAATGC GGTGCAGGCC GGACAATATG TCAAAGTGGA TTGGGGCACG GCCTTTAATA TCCTGCATGC GCAGGAATAT GCCGCCTTAC CCGTGCCGAC CTTACATACC AGTTCGGCCC GTATCGCCTT GGATTTTATC TTGAATAACG GTGGCTGCGC GTTTTTACCC GAGCATTTGG TTCTGCCACT GTTGAACCGC GGCGAGCTGC ATTTAGTTGC GGGCGCGAGC GCCATTTCAC GCAGCGTGTA TGTTGCCTAT TGGGCCGAAA ATGACCGCTT GGAGCAAATA AAACAGGCAA TTGGCTTTTT AGCCGATAAA ACAGTCGCTG AAACGCTGTG A
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Protein sequence | MDTDLLKTFL EVSRTRHFGK AAENLYLTRS AVSFRVKQLE SILGVALFER QRNNIQPTPA GERMLGHAEA VLTAWERAKQ DVSLSQLQST QLAIGAGPNI WDAYLQGHLQ HLHVGLPGVA LRTEVLPLTV MTRQLMDRTL DLAISFDPPK LDQFELVQLG QINLLLVSKT MDVAVNAVQA GQYVKVDWGT AFNILHAQEY AALPVPTLHT SSARIALDFI LNNGGCAFLP EHLVLPLLNR GELHLVAGAS AISRSVYVAY WAENDRLEQI KQAIGFLADK TVAETL
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