Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2157 |
Symbol | |
ID | 4252730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2585670 |
End bp | 2586398 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638118783 |
Product | DNA polymerase III, epsilon subunit |
Protein accession | YP_734287 |
Protein GI | 113970494 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family [TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000679182 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0877249 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATATTA TCTCAAACGC GAGCCGTCAG GTTATTTTGG ATACTGAAAC CACGGGTATG AACCAAGGCA GTGGTGCAGT GTATTTAGGG CACAGAATTA TTGAGATAGG CTGTGTTGAG GTGATCAACC GCCGTTTAAC GGGACGTTAT TACCATCAAT ATATTAATCC CGGCCAAGCG ATTGACCCAG AAGCTATTGC GGTTCACGGG ATCACCGATG AGCGCGTCGC CAATGAGCCG CGATTTCATC AGATAGCGCA GGAGTTTATC GATTTTATCA GTGGCGCAGA AATTGTGGCC CATAACGCAA ACTTCGACGT GAGCTTTATG GACCATGAGT TTTCACTGCT GCAGCCTTTA GGGCCAAAGA CGAGTGATAT TTGTGAGATT TTAGACTCCC TCGACATTGC AAAATTTTTG CATCCAGGGC AAAAGAACAA CTTAGACGCG CTGTGTAAAC GTTATGGCAT AGATAACTCT CGCCGCCTGT ACCACGGGGC ATTACTCGAC GCCGAGATCC TTGCTGATGT GTATTTGGCG ATGACGGGCG GGCAGACTAA GTTTAATCTT TCTAACGAAG AAGTCGGCCA AGAGGCCGGT GGTATTCAAC GCTTTGATCC CACATCACTT AATCTTAAAG TGATCCGCGC ATCTGCCGAT GAACTCGTTA TGCATGAAGA GCGTCTTGAT TTAGTCGCAA AATCAGGAAA ATGCCTCTGG AGAGGATAA
|
Protein sequence | MNIISNASRQ VILDTETTGM NQGSGAVYLG HRIIEIGCVE VINRRLTGRY YHQYINPGQA IDPEAIAVHG ITDERVANEP RFHQIAQEFI DFISGAEIVA HNANFDVSFM DHEFSLLQPL GPKTSDICEI LDSLDIAKFL HPGQKNNLDA LCKRYGIDNS RRLYHGALLD AEILADVYLA MTGGQTKFNL SNEEVGQEAG GIQRFDPTSL NLKVIRASAD ELVMHEERLD LVAKSGKCLW RG
|
| |