| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2155 |
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| Symbol | |
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| ID | 4252728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2580979 |
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| End bp | 2583072 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638118779 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_734285 |
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| Protein GI | 113970492 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000675126 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0795671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAGTA GTCGTTTTCA AGATGCGGAT ACACAAGTTC AACTTATCCA ATTGGCACCC
TTATTGAATC AGGCTGGTGT CTACATATTC ACGAAAGACC ATGCTGATCG CTATACCTTC
GTAAATGAAG CTGTCTGTAA ATTTTATCAG GCATCCTTGC CAGAAATCTT GGGGCAGAAG
GCTGAACAAT TCTTGGAGCT TGGGCTAGCA AAAATACTGC GCGAAGGAGA TAAAAGGGTT
TTACAACAGG GTGAAGAATT ATTAATGGAG GAGGAGCTGG TCGTTAGAAA GACCAGAGAA
AAACGGCTTT TTTGGTCAAT TAGAATACCA CTACGAGACA TTAACGGTGA TATTTCTGGA
CTATTTGGCA TATCGATTGA CATCACAGGC CGCAGAAGTA TTGCAGATAG AATTGGTGAG
CACAATCAAT TGCTTAATAC TCTTCTTTCA AACATTGATG CCTTTGTTTA TATGAAGTCG
ATTGACGGTA AATATCTATA TGCTAATCAC AAAATTGTTG AACTCCACAA TCGTTCATTA
AGTGATATTA TCGGTAAAAC CGATCTCGAA TTGATGAATG AGAATTTTGC GGATCCTTTA
ATGGAGATGG ATAAGCAAGT TTTTCAATCC GGTTTGCGTA AGAGTACACA AGAAATAGTC
GTTGGAGCCG ACGGTATTGA ACGTTCTTTT TGGTCAATAA AAGTACCGAT AAAACTGCCG
GGACAAGAAC CTGCATTAGT TGGATTTTCA ACTGAAATCA CTGAACTCTT ACAACTCAAG
GAACATCTAG AATATCAGCG TGTTACAGAT AATCTGACCG GCCTTCCTAA CCAGCACAAA
TTTGAACAAT CGTTACAACT AGCACTGGAC AATGCAAAGC GTTCTAAACA ACAGTTAGCG
GTATTACTGA TAAATTTTGA TCAGTTTAAA TATGTAAATA ATGCATTGGG TCATGAATCT
GCAAATGAGA TTATCAAAGC AGCTGCTAGA CGGTTGGATC AGTGTGATTG GTTGTCCGGT
AGTCTTGCCA GATTTTCCAG TGGTGACTTT GCCATATTAC TGGCAAAAAC AGGATCGGCA
GACGAAGTGG CCATGGTCGC AGAACGTCTA CGAATGGTAT GTGCCGAACC ATATCGGGTT
GCAGGACAAG TCTTTCATCT AACGGCGAGT GTGGGTGTCA GTAGTTACCC TGCAGATGGC
GATATGGTTT GGCACTTAAT TAAACATGCC GAATCAGCTA TGTATCATGC CAAAGATCAA
GGGCGCGATC AGATACAGTT TTATTCTGCT CATCTCAGTA AAGCCGTATC TGAGAGAATA
CTGTTAGAAC GGGATTTGCG CATTGCTTTA ATAGAGAAAC AATTTGAACT CTATTACCAA
CCCAAAATAC GCTTGGCAGA CAAACAAGTC GCAGGAGTTG AGGCCCTACT CCGCTGGAAC
AGACCCATGC ATGGCTTTAT GTCTCCAGCA TTGTTTATCC CTCTGGCAGA GAGCCTTGGT
TTGATAAATC AAATTGGCGA CTGGGTGATA GAAACAGCCT GCCAACAATT ATCAGCATGG
TCGACTCAAG GATTAGGTGA AATTCAAATA GCCGTTAATC TTTCTCCCAG CCAACTAACC
AGTTCCACAT TACTAGATCG GGTGAAGTTG TTACTTGCTC AATATGCAAT TAAACCCAAC
ATGCTGGAAA TGGAGGTAAC AGAGTCAATG ATGATGCACA ATCCCGAGGA AGCCATCAGT
AAACTCCAAG CGTTGAGAGA ATTGAATATC CAACTTTATA TTGATGATTT TGGCACGGGT
TACTCATCCA TGTCATATCT TAAACGCCTA CCGATCAATG CGTTGAAACT GGATCGCAGT
TTCATTATTC ATATGGCCAC CGATCCCCGT GATGCCGATG TTTGTGAAGG GATAATCGAA
CTGGCGCATA AACTCGGATT AGATGTGGTG GCCGAAGGTG TTGAAACTCA AGCACAATAT
GATGCATTGC TTGAGCGAGG TTGCGATATT ATTCAGGGCT ATTTGTACAG CCGTCCTTTG
CCAATAGAAC AAGTCTCCCG TTTTTTATTA AAGCATTTAA TGTGTAAGGC CTGA
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| Protein sequence | MPSSRFQDAD TQVQLIQLAP LLNQAGVYIF TKDHADRYTF VNEAVCKFYQ ASLPEILGQK
AEQFLELGLA KILREGDKRV LQQGEELLME EELVVRKTRE KRLFWSIRIP LRDINGDISG
LFGISIDITG RRSIADRIGE HNQLLNTLLS NIDAFVYMKS IDGKYLYANH KIVELHNRSL
SDIIGKTDLE LMNENFADPL MEMDKQVFQS GLRKSTQEIV VGADGIERSF WSIKVPIKLP
GQEPALVGFS TEITELLQLK EHLEYQRVTD NLTGLPNQHK FEQSLQLALD NAKRSKQQLA
VLLINFDQFK YVNNALGHES ANEIIKAAAR RLDQCDWLSG SLARFSSGDF AILLAKTGSA
DEVAMVAERL RMVCAEPYRV AGQVFHLTAS VGVSSYPADG DMVWHLIKHA ESAMYHAKDQ
GRDQIQFYSA HLSKAVSERI LLERDLRIAL IEKQFELYYQ PKIRLADKQV AGVEALLRWN
RPMHGFMSPA LFIPLAESLG LINQIGDWVI ETACQQLSAW STQGLGEIQI AVNLSPSQLT
SSTLLDRVKL LLAQYAIKPN MLEMEVTESM MMHNPEEAIS KLQALRELNI QLYIDDFGTG
YSSMSYLKRL PINALKLDRS FIIHMATDPR DADVCEGIIE LAHKLGLDVV AEGVETQAQY
DALLERGCDI IQGYLYSRPL PIEQVSRFLL KHLMCKA
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