| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2124 |
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| Symbol | |
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| ID | 4252697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2535895 |
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| End bp | 2537439 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118748 |
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| Product | fumarase |
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| Protein accession | YP_734254 |
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| Protein GI | 113970461 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00166655 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCTC ACCATGAAAC GTCTGAAAAT GTAGTGATTA AACAAGCCGA CTTTATTGAA
AGTGTGGCCG ATGCCCTGCA ATACATCTCC TATTATCATC CCAAAGATTT TGTGGATGCC
ATGAGCGAAG CTTATGAGCG TGAGCAAAGT GCGGCGGCGA AGGATGCGAT TGCGCAAATT
TTGATTAACT CGCGTATGTC TGCCGAAGGT AAACGCCCAC TGTGTCAAGA CACGGGTATT
GTGACCACCT TCGTTAAGAT TGGTATGGGA GTTAAGTGGG ACAAAACCGA TATGACCGTG
CAGCAAATGG TCGATGAAGG TGTGCGTCGT GCTTATACCA ATCCAGATAA CCCACTGCGT
GCATCGATTG TGGCTGATCC TGCGGGTAGC CGTAAAAACA CCAAAGACAA CACGCCATCT
GTAGTGCATA TCGATATGGT GCCAGGCAAT CATATTGAAG TCGCTATCGC AGCCAAGGGC
GGCGGCAGTG AAAACAAAGC CAAGATGGTG ATGTTAAACC CATCTGACGA TATCGCCGCT
TGGGTTGAAA AAACGCTGCC AACCATGGGC GCGGGCTGGT GTCCACCGGG TATGCTCGGC
ATCGGTATTG GTGGCACCGC TGAAAAGGCT GCTGTGCTGG CGAAAGAAGC GCTGATGGAA
AGCGTGGATA TCCATGAGTT AATGGCACGC GGTGCAGAAA CCAGCGAAGA AAAACTGCGT
TTAGACATTT TCGAACGTGC TAACAACCTC GGTATTGGTG CGCAGGGTCT TGGCGGTTTA
ACCACAGTGT TAGACGTGAA AATCAAATCT GCACCTACTC ATGCAGCATC AAAACCTGTG
GTGATGATCC CGAACTGCGC GGCAACTCGC CACGTACACT TCCATTTAGA TGGTACTGGC
CCTGCTGATC TTGCGCCGCC GACACTGAGC GACTGGCCAG AAATCACCCG CGAAGTGGGC
AGCGATGTGC GCCGTGTTAA TTTAGACACA GTTACTCAAG CCGATATCGA GCAGTGGAAG
AGCGGTGAAA CCATTCTGTT AAGCGGTAAA ATGCTCACCG GCCGTGATGC TGCCCATAAG
CGTATCCAAA GCCTGATTGA AAGCGGTGAA GGTTTACCAG AAGGCGTGGA CTTTACTGGC
AAGTTTATCT ACTACGTGGG CCCAGTTGAC CCAGTCGGTA ACGAAGTTGT GGGTCCTGCT
GGCCCAACTA CCGCGACCCG TATGGACAAG TTCACCGATC TGATGCTGGA TAAAACCGGA
CTGATGGGCA TGATTGGTAA GGCTGAACGT GGTCCAGCGA CCGTTGAGTC TATCAAGAAA
CACAAAGCTG TGTACCTGAT GGCTGTGGGC GGCGCGGCTT ACTTAGTGTC GAAAGCCATT
AAGAAATCCC GCGTAGTGGC GTTTGCCGAC TTAGGTATGG AAGCAATTTA CGAGTTTGAC
GTACAAGATA TGCCAGTGAC TGTGGCGGTA GACTCAAACG GCGTGAATGC CCATGAAACT
GGCCCTGCGA TTTGGAAAGT GAATATCGCT AACGCCAAAG CCTAA
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| Protein sequence | MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI
LINSRMSAEG KRPLCQDTGI VTTFVKIGMG VKWDKTDMTV QQMVDEGVRR AYTNPDNPLR
ASIVADPAGS RKNTKDNTPS VVHIDMVPGN HIEVAIAAKG GGSENKAKMV MLNPSDDIAA
WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAETSEEKLR
LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGTG
PADLAPPTLS DWPEITREVG SDVRRVNLDT VTQADIEQWK SGETILLSGK MLTGRDAAHK
RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGNEVVGPA GPTTATRMDK FTDLMLDKTG
LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KKSRVVAFAD LGMEAIYEFD
VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NAKA
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