| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2047 |
|---|
| Symbol | |
|---|
| ID | 4252620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2435710 |
|---|
| End bp | 2436564 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638118663 |
|---|
| Product | DNA-binding transcriptional regulator HexR |
|---|
| Protein accession | YP_734177 |
|---|
| Protein GI | 113970384 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.20632 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TAGAAAAGGT TCAAAAAAGC CTCACCCATT TTAGTAAGTC AGAACGCAAG
GTTGCAGAGG TGATCTTAGC CTCTCCGCAA ACAGCTATTC ACTCGAGTAT TGCCACTCTA
GCTAAGATGG CAGATGTGAG TGAACCTACT GTGAACCGTT TCTGTCGCCG CTTAGATACT
AAAGGCTTTC CTGATTTTAA GTTACATCTG GCGCAAAGTC TCGCAAACGG TACGCCTTAT
GTGAGCCGCC ATGTGGAAGA AGATGACTCT CCAGAGTCTT ACACGACAAA AATTTTCGAA
TCATCAATGG CTTCCTTAGA TACAGCACGT CAAAGCTTAG ACGTCACTGC CATCAATAAA
GCCGTGGATA TTCTGACTCA AGCCAAAACC ATCTCCTTCT TTGGCTTAGG CGCTTCGGCC
TCCGTTGCCC ATGATGCCCA GAATAAATTT TTCCGTTTTA ATGTGCCTGT CATCTGTTTT
GACGATGTTC TGATGCAGCG CATGAGCTGT ATTAACAGCA ATGAAGGCGA TGTTGTGGTG
CTGATTTCCC ATACAGGCCG CACTAAATCA TTGATAGAAA TAGCGCGTTT AGCGAGAGAA
AACGGCGCGG CTGTGATTGG TATTACGGCT CGTAACTCAC CGTTATCCAT GGAATGTACA
CTGCCCGTGA CGATGGAAGT GCCTGAAGAT ACCGATATGT ATTTGCCTAT GGCCTCGCGT
TTAGCGCAAT TGGTGACTAT AGATGTATTG GCGACTGGTT TTACCCTACG CCGCGGCCCA
CGTTTCCGTG ACAATTTAAA GCGTGTGAAA GAAGTGTTGA AAGAGTCTCG TATCAATAAA
GATCCGATAC TGTAA
|
|---|
| Protein sequence | MNTLEKVQKS LTHFSKSERK VAEVILASPQ TAIHSSIATL AKMADVSEPT VNRFCRRLDT
KGFPDFKLHL AQSLANGTPY VSRHVEEDDS PESYTTKIFE SSMASLDTAR QSLDVTAINK
AVDILTQAKT ISFFGLGASA SVAHDAQNKF FRFNVPVICF DDVLMQRMSC INSNEGDVVV
LISHTGRTKS LIEIARLARE NGAAVIGITA RNSPLSMECT LPVTMEVPED TDMYLPMASR
LAQLVTIDVL ATGFTLRRGP RFRDNLKRVK EVLKESRINK DPIL
|
|---|
| |