Gene Shewmr4_2023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2023 
Symbol 
ID4252596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp2409373 
End bp2410383 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content46% 
IMG OID638118639 
Productglyceraldehyde-3-phosphate dehydrogenase 
Protein accessionYP_734153 
Protein GI113970360 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.000000315203 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.00000231393 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTATCC GTGTAGCAAT AAATGGTTAT GGCCGTATCG GTAGAAACGT ATTACGCGCC 
CTGTATGAAA GCGAAAAAGC TTACCCAATC AAAATTGTTG CCATCAACGA TTTAGGCGAC 
GCTTCAATCA ACGCTCACCT GACAAAATAC GATTCTGTAC ATGGTCGTTT CAATGCCAAA 
GTTGAGCATG ATGCTGAAGC AATTTATGTC AACGGCGACA AGATCCTCAC CTTCCAAGAA 
CGCGATCCAG GTAAATTACC TTGGGGCGAC TTACAAGTTG ACGTCGTGTT CGAATGTACT 
GGTATCTTCA CTTCTAAAGA ATCTGTACAG CCACATTTAG CGGCGGGCGC GAAGAAAGTC 
ATTATTTCTG CACCAGGTAA AAACGTTGAT GCAACCGTCG TTTACGGTGT GAACAACAAT 
GTATTGACCG CGGATATGAC TGTTATCTCT AACGCTTCAT GTACCACTAA CTGTTTAGCG 
CCTTTCGCTA AGCCGTTAAA TGACGAAATT GGCATCGAAT CCGGTCTGAT GACCACCATT 
CATGCTTACA CCAACGATCA ACGTTTATCT GACGTATACC ACACAGATTT ACGCCGTGCC 
CGCGCTGCAG CACTGTCAAT GATCCCAACT AAAACTGGCG CTGCCGCGGC AGTAGGTTTA 
GTTGTACCTG AATTACAAGG TAAATTCGAT GGTTTAGCAG TACGTGTACC GACTGTTAAC 
GTGTCTTTAG TGGATTTATC TTTCATTGCA GCACGTGATA CCACTGTTGA AGAAGTTAAC 
GCCATCATCG AACGTGCCGC TGCTGTTGCG CCTCTGAGCG AAGTGTTAGC GGTTAACAAA 
GAGCCACTGG TGTCTATCGA CTTTAACCAC AATGCGTTTT CATCTAACTT CGATGCGACT 
CAAACCCGCG TTAACGGCCG TTTAGTTAAA GTGATGGCAT GGTACGATAA CGAATGGGGC 
TTCAGTAACC GTATGTTGGA CAACGCGGTT GCGCTGATGA ACGCGAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKAYPI KIVAINDLGD ASINAHLTKY DSVHGRFNAK 
VEHDAEAIYV NGDKILTFQE RDPGKLPWGD LQVDVVFECT GIFTSKESVQ PHLAAGAKKV 
IISAPGKNVD ATVVYGVNNN VLTADMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAALSMIPT KTGAAAAVGL VVPELQGKFD GLAVRVPTVN 
VSLVDLSFIA ARDTTVEEVN AIIERAAAVA PLSEVLAVNK EPLVSIDFNH NAFSSNFDAT 
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMNAK