| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1978 |
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| Symbol | araD |
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| ID | 4252551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2352913 |
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| End bp | 2353608 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118591 |
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| Product | L-ribulose-5-phosphate 4-epimerase |
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| Protein accession | YP_734108 |
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| Protein GI | 113970315 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000786518 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0917284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTTTT TAGAGCTAAA ACGCGAAGTA TACGAAGCCA ACATGGAGCT TGAGAAACGC
AAACTGGTGA CTTACACCTT CGGCAACGTT TCACAAATTG ACCGCCAACT CGGCGTGATT
GGTATCAAGC CCAGCGGCGT GCCCTATGAA GATTTGAAGG TTGAAGACAT TGTAATTGTT
GACCTTGAGA ATCAAATCGT AGAAGGGCGC ATGCGTCCTT CATCCGATAC CAAGACACAC
ACCTATTTGT ATCGCCAGTG GCAGAGTATT GGTGGCATTA CCCATACCCA TTCAACCTAT
GCCACCGCCT GGGCGCAAGC GCAGATAGCG ATTCCCTGCT TAGGCACGAC ACAAGCCGAT
TATGTGTACG GTGAAATCCC ATGCACAGCA GTGATGCGAA GCGATCAGAT CAGCCGCGAC
TATGAAGAAG AAACCGGCGT GCAGATCCTC GATTGTTTCG CCGACCGAGA TCCCAACGAG
TCGCCCATGG TGATAGTGGC AGGCCATGCA CCGTTCACTT GGGGCGCGAA TGCGGCTAAA
TCTGTGTACC ACGCCGTGTT GCTCGAAGAA ATCGCTCGGA TGGCGTATCT CACCAAAACT
TTATCACCAG GCATTAGTCA GTTAAAACAA GAGCTTATTG ATAAGCATTA TTTGCGTAAG
CATGGAAAAG ACGCTTATTA CGGCCAAAGC AAGTAA
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| Protein sequence | MSFLELKREV YEANMELEKR KLVTYTFGNV SQIDRQLGVI GIKPSGVPYE DLKVEDIVIV
DLENQIVEGR MRPSSDTKTH TYLYRQWQSI GGITHTHSTY ATAWAQAQIA IPCLGTTQAD
YVYGEIPCTA VMRSDQISRD YEEETGVQIL DCFADRDPNE SPMVIVAGHA PFTWGANAAK
SVYHAVLLEE IARMAYLTKT LSPGISQLKQ ELIDKHYLRK HGKDAYYGQS K
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