Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1974 |
Symbol | |
ID | 4252547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2347649 |
End bp | 2348560 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118586 |
Product | putative DNA-binding transcriptional regulator |
Protein accession | YP_734104 |
Protein GI | 113970311 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00037862 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.59258 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGCTA TGCTCTCGGA ACAAGCGTTA GAACTCATTG ATATCGTGGC CCGTGTTGGG AGTTTTACGG CAGCAGCCAA TCGACTACAC AAGGTCCCTT CTGCGGTCAG TTATGCCGTT AAACAAATCG AAGAAGAACT TGGCGTAGTG TTATTTGAGC GCCACCACCG CAGCGTGACC TTGACCCCCG CGGGAGAGCA TTTTGTTAAG CAAGCCAGAA ACTTGCTGAC TCAAATGGAT GAGATGAAAC GCGGCACCCA GCGTGTGGCC AACGGCTGGC AACCCACATT GTCTATCGCC TTAGATAACA TAGTGCGCGC CGATAGAATT AGCGTATTAA TTGCCGACTT TTACCGTCAT TTCCATGATA TTGAGCTTAT CATCCGCATC GAGGTCTTTA ACGGTGTGTG GGAGGCGCTT GCGACCGGTC GCAGTGATAT CGCCATTGGT GCAACAACGG CGATCCCTGT TGGAGGCGTA TATCAATATA AAGACATGGG CGATATTCAA TGGGCATTTT TGGTGAGTAA AAACCATCCC TTAGCCAGTA TTGACCGGCC CTTGACGGAT GATGAATTGC GTCCCTTCCC CTCTATTTGT TTGGAAGATA CCTCGCGGGA AATTCCTAAG CGCATGACCT GGTTATTGGA GAATCAACGC AGACTCGTGG TGCCAGATTG GATCCGCGCA ATTAACTGCT TTAGAGAGGG ATTAGGTATC GGCTATATGC CAGTACATCT GGCCAGCGTA TTTATTAAAG CGGGCGCCTT GGTTGAAAAG CAGCTTGAAA ATCCGAAATT AACCAGCCCA TGTTGCTTAG CTTGGAACGC CGATAAGATG TCGCCCGCCC TAGCTTGGGT GCTCGACTAC TTAGGAGATA CCGAGAAATT ACACCGTGAA TGGCTGGCGT AA
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Protein sequence | MSAMLSEQAL ELIDIVARVG SFTAAANRLH KVPSAVSYAV KQIEEELGVV LFERHHRSVT LTPAGEHFVK QARNLLTQMD EMKRGTQRVA NGWQPTLSIA LDNIVRADRI SVLIADFYRH FHDIELIIRI EVFNGVWEAL ATGRSDIAIG ATTAIPVGGV YQYKDMGDIQ WAFLVSKNHP LASIDRPLTD DELRPFPSIC LEDTSREIPK RMTWLLENQR RLVVPDWIRA INCFREGLGI GYMPVHLASV FIKAGALVEK QLENPKLTSP CCLAWNADKM SPALAWVLDY LGDTEKLHRE WLA
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