| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1951 |
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| Symbol | |
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| ID | 4252524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2328664 |
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| End bp | 2330043 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118563 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_734081 |
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| Protein GI | 113970288 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000663691 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.290024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCATT CAGGCTTTCA GGCCAAACGC TTAATTCAAC TCGCACTCCC AGTGTTGATC
GCCCAAGTGA CACAAACCAT GATGGGGTTT ATCGATACTG TTATGGCGGG CCGCGTCAGT
GCTGTCGATA TGGCCGCCGT GGCCGTAGGA ACTAGTCTTT GGTTACCCGC CATCTTATTT
GTCCAAGGGT TGTTGATGGC GTTTACGCCG TTATTTGCCC ATCACAATGG CGCAAACAAT
CAGAAAGCCA TTCAACCGCT GGCGTTTCAA GGCGCTTATC TGGCCTTAAT TGGTGGCCTT
GGCGTGATGG CGTTTCTCGC ATCCGCGCCA CTCGTGCTTA GCCATATGAA TTTAGAGCCC
CAATTGTACA ACTTAACCAT AGGATATATC GACGGTATTT TATGGGGCGC GCCCGCATTT
GTGCTCTATC AGGTATTACG CGGTTGCAGT GAAGGGATTT CTTACACATT ACCGACCATG
ATCATCGGAT TCGTGGGGTT AGCGGTGAAT ATCCCGGCAA ACTATATCTT TATCTATGGC
CATTTCGGCG TGCCAGCCAT GGGCGGCGCA GGTTGTGGTG TCGCGACTGC TTTAGTCTTT
TGGGCCATGT TAATAGCCAT GACGATTTAT ATGCAGTTCC ATAAAAAGTT TGCTGCATTG
GCGCCCTTTA GCCAGTTCCA TCGCCCCGAT TTTACCACGA TGAAGAAGAT GACGAAGCTT
GGGATGCCGA TTGCGATGGC GCTCTTCTTT GAGGTGAGCC TGTTTGCGAT TATCGCCCTG
CTGCTGGCGC CATTAGGCGC GACTGTGGTG GCCAGCCATC AGATTGCGTT GAACTTCTCC
GCCATAGTAT TTATGTTGCC ACTTTCGATA GGTATTGCCG TCTCGATTCG TATTGGCTAC
TACCTCGGCC GCGATCGTGC GGATATTTCT GCCGTGGTGG CAAAGGTCGG ATTGTGGTTG
GCGCTTTCAT TGGCATTGTC GACGGCAATC TTAACTGTGT TATTCCGTTT CCAAATCGCC
GAGTTGTATA ACGGCGATCC CGAAGTGGTG GTACTTGCGG GCAGTTTGAT GCTGATGGCC
GCGCTGTATC AATTATCTGA CTCTGTCCAA GTGGTCGCCG CCGGCGCCTT GCGTGGATAT
AAAGATACCC GCAGTGCGTT TTACATTACG CTATTCTCCT ATTGGGGCAT CGGCATGACA
TTAGGTTACA CCTTGGCGTA TACCGACTTA ATCGTCCCCG CCATGGGCGC CCATGGTTTT
TGGACAGGAT TAATTGCAGG CCTCACCTCG GCGGCGCTGC TGTTTTTCAT CCGCCTTCGT
TATATTCAAA AGCATGGTGT GCATTTAAGT TTGATTGAAG GCGACAGCGT GCATCACTAA
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| Protein sequence | MNHSGFQAKR LIQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPAILF
VQGLLMAFTP LFAHHNGANN QKAIQPLAFQ GAYLALIGGL GVMAFLASAP LVLSHMNLEP
QLYNLTIGYI DGILWGAPAF VLYQVLRGCS EGISYTLPTM IIGFVGLAVN IPANYIFIYG
HFGVPAMGGA GCGVATALVF WAMLIAMTIY MQFHKKFAAL APFSQFHRPD FTTMKKMTKL
GMPIAMALFF EVSLFAIIAL LLAPLGATVV ASHQIALNFS AIVFMLPLSI GIAVSIRIGY
YLGRDRADIS AVVAKVGLWL ALSLALSTAI LTVLFRFQIA ELYNGDPEVV VLAGSLMLMA
ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWGIGMT LGYTLAYTDL IVPAMGAHGF
WTGLIAGLTS AALLFFIRLR YIQKHGVHLS LIEGDSVHH
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